Mercurial > repos > peterjc > blastxml_to_top_descr
comparison tools/ncbi_blast_plus/blastxml_to_top_descr.xml @ 6:8a0771c5e236 draft
Uploaded v0.0.5, reports number of queries with hits in stdout (peek text).
| author | peterjc |
|---|---|
| date | Wed, 17 Apr 2013 10:53:58 -0400 |
| parents | 662fea0fe6b2 |
| children | a7add03a44fd |
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| 5:662fea0fe6b2 | 6:8a0771c5e236 |
|---|---|
| 1 <tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.4"> | 1 <tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.5"> |
| 2 <description>Make a table from BLAST XML</description> | 2 <description>Make a table from BLAST XML</description> |
| 3 <version_command interpreter="python">blastxml_to_top_descr.py --version</version_command> | |
| 3 <command interpreter="python"> | 4 <command interpreter="python"> |
| 4 blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN} | 5 blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN} |
| 5 </command> | 6 </command> |
| 6 <inputs> | 7 <inputs> |
| 7 <param name="blastxml_file" type="data" format="blastxml" label="BLAST results as XML"/> | 8 <param name="blastxml_file" type="data" format="blastxml" label="BLAST results as XML"/> |