comparison tools/ncbi_blast_plus/blastxml_to_top_descr.xml @ 7:a7add03a44fd draft

Uploaded v0.0.6, checks return code for error handling

6:8a0771c5e236

<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.5">
    <description>Make a table from BLAST XML</description>
    <version_command interpreter="python">blastxml_to_top_descr.py --version</version_command>
    <command interpreter="python">
      blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN}
    </command>
    <inputs>
        <param name="blastxml_file" type="data" format="blastxml" label="BLAST results as XML"/> 
	<param name="topN" type="integer" min="1" max="100" optional="false" label="Number of descriptions" value="3"/>
    </inputs>
    <outputs>

7:a7add03a44fd

<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.6">
    <description>Make a table from BLAST XML</description>
    <version_command interpreter="python">blastxml_to_top_descr.py --version</version_command>
    <command interpreter="python">
      blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN}
    </command>
    <stdio>
        <!-- Assume anything other than zero is an error -->
        <exit_code range="1:" />
        <exit_code range=":-1" />
    </stdio>
    <inputs>
        <param name="blastxml_file" type="data" format="blastxml" label="BLAST results as XML"/> 
	<param name="topN" type="integer" min="1" max="100" optional="false" label="Number of descriptions" value="3"/>
    </inputs>
    <outputs>