comparison tools/ncbi_blast_plus/blastxml_to_top_descr.xml @ 8:a8ef75aab1f9 draft

Uploaded v0.0.7, README style updated, MIT license

7:a7add03a44fd

<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.6">
    <description>Make a table from BLAST XML</description>
    <version_command interpreter="python">blastxml_to_top_descr.py --version</version_command>
    <command interpreter="python">
      blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN}
    </command>

then use this tool to make a table of the top three BLAST hits. This
can give you a 'quick and dirty' crude annotation, potentially enough
to spot some problems (e.g. bacterial contaimination could be very
obvious).

    </help>
</tool>

8:a8ef75aab1f9

<tool id="blastxml_to_top_descr" name="BLAST top hit descriptions" version="0.0.7">
    <description>Make a table from BLAST XML</description>
    <version_command interpreter="python">blastxml_to_top_descr.py --version</version_command>
    <command interpreter="python">
      blastxml_to_top_descr.py "${blastxml_file}" "${tabular_file}" ${topN}
    </command>

then use this tool to make a table of the top three BLAST hits. This
can give you a 'quick and dirty' crude annotation, potentially enough
to spot some problems (e.g. bacterial contaimination could be very
obvious).

**Citation**

This wrapper is available to install into other Galaxy Instances via the Galaxy
Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr

    </help>
</tool>