diff tools/count_roi_variants/README.rst @ 1:3ee6f4d0ac80 draft

v0.0.5 Fix version inconsistency, using samtools v1.2 now.

--- a/tools/count_roi_variants/README.rst	Wed Feb 01 07:10:26 2017 -0500
+++ b/tools/count_roi_variants/README.rst	Tue May 16 09:14:18 2017 -0400
@@ -80,6 +80,9 @@
 v0.0.2  - Cope with pipes in reference name (e.g. NCBI style FASTA naming)
 v0.0.3  - Include a functional test for using an unrecognised reference.
 v0.0.4  - Improved usage text and README for use outside of Galaxy.
+v0.0.5  - Fix samtools dependency version inconsistency, using v1.2 now.
+        - Use ``<command detect_errors="aggressive">`` (internal change only).
+        - Single quote command line arguments (internal change only).
 ======= ======================================================================
 
 
@@ -93,17 +96,17 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/count_roi_variants/
+    $ planemo shed_update -t testtoolshed --check_diff tools/count_roi_variants/
     ...
 
 or::
 
-    $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/count_roi_variants/
+    $ planemo shed_update -t toolshed --check_diff tools/count_roi_variants/
     ...
 
 To just build and check the tar ball, use::
 
-    $ planemo shed_upload --tar_only  ~/repositories/pico_galaxy/tools/count_roi_variants/
+    $ planemo shed_upload --tar_only tools/count_roi_variants/
     ...
     $ tar -tzf shed_upload.tar.gz
     tools/count_roi_variants/README.rst