Mercurial > repos > peterjc > effectivet3
comparison tools/effectiveT3/effectiveT3.xml @ 5:1ea715da1879 draft
Uploaded v0.0.13, embed citation, relax test for floating point differences
| author | peterjc |
|---|---|
| date | Tue, 25 Nov 2014 08:28:24 -0500 |
| parents | f7ce32e13bc6 |
| children | 0f6eb4a75000 |
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| 4:f7ce32e13bc6 | 5:1ea715da1879 |
|---|---|
| 1 <tool id="effectiveT3" name="Effective T3" version="0.0.12"> | 1 <tool id="effectiveT3" name="Effective T3" version="0.0.13"> |
| 2 <description>Find bacterial effectors in protein sequences</description> | 2 <description>Find bacterial effectors in protein sequences</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.0.1">effectiveT3</requirement> | 4 <requirement type="package" version="1.0.1">effectiveT3</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <version_command interpreter="python">effectiveT3.py --version</version_command> | 6 <version_command interpreter="python">effectiveT3.py --version</version_command> |
| 45 <tests> | 45 <tests> |
| 46 <test> | 46 <test> |
| 47 <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta" /> | 47 <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta" /> |
| 48 <param name="module" value="animal" /> | 48 <param name="module" value="animal" /> |
| 49 <param name="type" value="selective" /> | 49 <param name="type" value="selective" /> |
| 50 <output name="tabular_file" file="four_human_proteins.effectiveT3.tabular" ftype="tabular" /> | 50 <output name="tabular_file" file="four_human_proteins.effectiveT3.tabular" ftype="tabular" lines_diff="2"/> |
| 51 </test> | 51 </test> |
| 52 <test> | 52 <test> |
| 53 <param name="fasta_file" value="empty.fasta" ftype="fasta" /> | 53 <param name="fasta_file" value="empty.fasta" ftype="fasta" /> |
| 54 <param name="module" value="plant" /> | 54 <param name="module" value="plant" /> |
| 55 <param name="type" value="sensistive" /> | 55 <param name="type" value="sensitive" /> |
| 56 <output name="tabular_file" file="empty_effectiveT3.tabular" ftype="tabular" /> | 56 <output name="tabular_file" file="empty_effectiveT3.tabular" ftype="tabular" /> |
| 57 </test> | 57 </test> |
| 58 </tests> | 58 </tests> |
| 59 <help> | 59 <help> |
| 60 | 60 |
| 97 See also http://effectors.org/ | 97 See also http://effectors.org/ |
| 98 | 98 |
| 99 This wrapper is available to install into other Galaxy Instances via the Galaxy | 99 This wrapper is available to install into other Galaxy Instances via the Galaxy |
| 100 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/effectivet3 | 100 Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/effectivet3 |
| 101 </help> | 101 </help> |
| 102 <citations> | |
| 103 <citation type="doi">10.7717/peerj.167</citation> | |
| 104 <citation type="doi">10.1093/nar/gkq1154</citation> | |
| 105 <citation type="doi">10.1371/journal.ppat.1000376</citation> | |
| 106 </citations> | |
| 102 </tool> | 107 </tool> |