Mercurial > repos > peterjc > effectivet3
changeset 11:ed8c1babc166 draft default tip
v0.0.21 - Added bio.tools xref
| author | peterjc |
|---|---|
| date | Tue, 12 Mar 2024 16:04:13 +0000 |
| parents | a46d7861c32c |
| children | |
| files | tools/effectiveT3/README.rst tools/effectiveT3/effectiveT3.py tools/effectiveT3/effectiveT3.xml |
| diffstat | 3 files changed, 6 insertions(+), 1 deletions(-) [+] |
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--- a/tools/effectiveT3/README.rst Fri Apr 16 22:34:56 2021 +0000 +++ b/tools/effectiveT3/README.rst Tue Mar 12 16:04:13 2024 +0000 @@ -101,6 +101,7 @@ v0.0.19 - Python 3 compatible exception handling. v0.0.20 - Work with Effective T3 as installed by BioConda (which provides a wrapper script which can be used to find the main JAR file folder). +v0.0.21 - Added bio.tools xref ======= ======================================================================
--- a/tools/effectiveT3/effectiveT3.py Fri Apr 16 22:34:56 2021 +0000 +++ b/tools/effectiveT3/effectiveT3.py Tue Mar 12 16:04:13 2024 +0000 @@ -128,6 +128,7 @@ of os.environ.get("PATH"), or can be overridden with a custom search path. """ + # Check that a given file can be accessed with the correct mode. # Additionally check that `file` is not a directory, as on Windows # directories pass the os.access check.
--- a/tools/effectiveT3/effectiveT3.xml Fri Apr 16 22:34:56 2021 +0000 +++ b/tools/effectiveT3/effectiveT3.xml Tue Mar 12 16:04:13 2024 +0000 @@ -1,5 +1,8 @@ -<tool id="effectiveT3" name="Effective T3" version="0.0.20"> +<tool id="effectiveT3" name="Effective T3" version="0.0.21"> <description>Find bacterial effectors in protein sequences</description> + <xrefs> + <xref type="bio.tools">effectivet3</xref> + </xrefs> <requirements> <requirement type="package" version="1.0.1">effectiveT3</requirement> </requirements>