Mercurial > repos > peterjc > get_orfs_or_cdss

comparison tools/filters/get_orfs_or_cdss.txt @ 2:324775a016ce draft

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Uploaded v0.0.3, bundle Ssuis.fasta test file X record Python script version
author peterjc
date Tue, 23 Apr 2013 11:48:43 -0400
parents 922d69bd5258
children
comparison
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1:922d69bd5258 2:324775a016ce
36 ======= 36 =======
37 37
38 v0.0.1 - Initial version. 38 v0.0.1 - Initial version.
39 v0.0.2 - Correct labelling issue on reverse strand. 39 v0.0.2 - Correct labelling issue on reverse strand.
40 - Use the new <stdio> settings in the XML wrappers to catch errors 40 - Use the new <stdio> settings in the XML wrappers to catch errors
41 v0.0.3 - Include unit tests.
42 - Record Python script version when run from Galaxy.
41 43
42 44
43 Developers 45 Developers
44 ========== 46 ==========
45 47
46 This script and related tools are being developed on the following hg branch: 48 This script and related tools are being developed on the following hg branch:
47 http://bitbucket.org/peterjc/galaxy-central/src/tools 49 http://bitbucket.org/peterjc/galaxy-central/src/tools
48 50
49 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball use 51 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
50 the following command from the Galaxy root folder: 52 the following command from the Galaxy root folder:
51 53
52 tar -czf get_orfs_or_cdss.tar.gz tools/filters/get_orfs_or_cdss.* test-data/get_orf_input*.fasta 54 $ tar -czf get_orfs_or_cdss.tar.gz tools/filters/get_orfs_or_cdss.* test-data/get_orf_input*.fasta test-data/Ssuis.fasta
53 55
54 Check this worked: 56 Check this worked:
55 57
56 $ tar -tzf get_orfs_or_cdss.tar.gz 58 $ tar -tzf get_orfs_or_cdss.tar.gz
57 filter/get_orfs_or_cdss.py 59 filter/get_orfs_or_cdss.py
58 filter/get_orfs_or_cdss.txt 60 filter/get_orfs_or_cdss.txt
59 filter/get_orfs_or_cdss.xml 61 filter/get_orfs_or_cdss.xml
62 test-data/get_orf_input.fasta
60 test-data/get_orf_input.Suis_ORF.nuc.fasta 63 test-data/get_orf_input.Suis_ORF.nuc.fasta
61 test-data/get_orf_input.Suis_ORF.prot.fasta 64 test-data/get_orf_input.Suis_ORF.prot.fasta
62 test-data/get_orf_input.t11_nuc_out.fasta 65 test-data/get_orf_input.t11_nuc_out.fasta
63 test-data/get_orf_input.t11_open_nuc_out.fasta 66 test-data/get_orf_input.t11_open_nuc_out.fasta
64 test-data/get_orf_input.t11_open_prot_out.fasta 67 test-data/get_orf_input.t11_open_prot_out.fasta
65 test-data/get_orf_input.t11_prot_out.fasta 68 test-data/get_orf_input.t11_prot_out.fasta
66 test-data/get_orf_input.t1_nuc_out.fasta 69 test-data/get_orf_input.t1_nuc_out.fasta
67 test-data/get_orf_input.t1_prot_out.fasta 70 test-data/get_orf_input.t1_prot_out.fasta
71 test-data/Ssuis.fasta
68 72
69 73
70 Licence (MIT/BSD style) 74 Licence (MIT/BSD style)
71 ======================= 75 =======================
72 76