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comparison tools/get_orfs_or_cdss/README.rst @ 6:64e67f172188 draft

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Uploaded v0.0.6, corrected automated dependency definition
author peterjc
date Thu, 21 Nov 2013 10:47:53 -0500
parents 5208c15805ec
children 705a2e2df7fb
comparison
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5:5208c15805ec 6:64e67f172188
65 v0.0.5 - Automated intallation of the Biopython dependency. 65 v0.0.5 - Automated intallation of the Biopython dependency.
66 - Use reStructuredText for this README file. 66 - Use reStructuredText for this README file.
67 - Adopt standard MIT License. 67 - Adopt standard MIT License.
68 - Updated citation information (Cock et al. 2013). 68 - Updated citation information (Cock et al. 2013).
69 - Renamed folder and adopted README.rst naming. 69 - Renamed folder and adopted README.rst naming.
70 v0.0.6 - Corrected automated dependency defintion.
70 ======= ====================================================================== 71 ======= ======================================================================
71 72
72 73
73 Developers 74 Developers
74 ========== 75 ==========
80 https://github.com/peterjc/pico_galaxy/tree/master/tools 81 https://github.com/peterjc/pico_galaxy/tree/master/tools
81 82
82 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use 83 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use
83 the following command from the Galaxy root folder:: 84 the following command from the Galaxy root folder::
84 85
85 $ tar -czf get_orfs_or_cdss.tar.gz tools/get_orfs_or_cdss/README.rst tools/get_orfs_or_cdss/get_orfs_or_cdss.* tools/get_orfs_or_cdss/repository_dependencies.xml test-data/get_orf_input*.fasta test-data/Ssuis.fasta 86 $ tar -czf get_orfs_or_cdss.tar.gz tools/get_orfs_or_cdss/README.rst tools/get_orfs_or_cdss/get_orfs_or_cdss.* tools/get_orfs_or_cdss/tool_dependencies.xml test-data/get_orf_input*.fasta test-data/Ssuis.fasta
86 87
87 Check this worked:: 88 Check this worked::
88 89
89 $ tar -tzf get_orfs_or_cdss.tar.gz 90 $ tar -tzf get_orfs_or_cdss.tar.gz
90 tools/get_orfs_or_cdss/README.rst 91 tools/get_orfs_or_cdss/README.rst
91 tools/get_orfs_or_cdss/get_orfs_or_cdss.py 92 tools/get_orfs_or_cdss/get_orfs_or_cdss.py
92 tools/get_orfs_or_cdss/get_orfs_or_cdss.xml 93 tools/get_orfs_or_cdss/get_orfs_or_cdss.xml
93 tools/get_orfs_or_cdss/repository_dependencies.xml 94 tools/get_orfs_or_cdss/tool_dependencies.xml
94 test-data/get_orf_input.fasta 95 test-data/get_orf_input.fasta
95 test-data/get_orf_input.Suis_ORF.nuc.fasta 96 test-data/get_orf_input.Suis_ORF.nuc.fasta
96 test-data/get_orf_input.Suis_ORF.prot.fasta 97 test-data/get_orf_input.Suis_ORF.prot.fasta
97 test-data/get_orf_input.t11_nuc_out.fasta 98 test-data/get_orf_input.t11_nuc_out.fasta
98 test-data/get_orf_input.t11_open_nuc_out.fasta 99 test-data/get_orf_input.t11_open_nuc_out.fasta