diff tools/get_orfs_or_cdss/README.rst @ 8:09a8be9247ca draft

v0.2.0 with GFF3 output

--- a/tools/get_orfs_or_cdss/README.rst	Thu Jul 30 12:35:31 2015 -0400
+++ b/tools/get_orfs_or_cdss/README.rst	Sat Jan 09 23:42:32 2016 -0500
@@ -3,6 +3,7 @@
 
 This tool is copyright 2011-2015 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
+Additions copyright 2015-2016 by Eric Rasche.
 See the licence text below (MIT licence).
 
 This tool is a short Python script (using Biopython library functions)
@@ -75,6 +76,7 @@
         - Using ``optparse`` for the Python command line API (Eric Rasche).
         - Added NCBI genetic code table 24, Pterobranchia Mitochondrial.
 v0.1.1  - Reorder XML elements (internal change only).
+v0.2.0  - Tool now also outputs GFF3 formatted calls (Eric Rasche).
 ======= ======================================================================
 
 
@@ -91,12 +93,12 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/get_orfs_or_cdss/
+    $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/get_orfs_or_cdss/
     ...
 
 or::
 
-    $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/get_orfs_or_cdss/
+    $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/get_orfs_or_cdss/
     ...
 
 To just build and check the tar ball, use::