Mercurial > repos > peterjc > get_orfs_or_cdss

diff test-data/get_orf_input.t11_open_prot_out.fasta @ 1:922d69bd5258 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.0.2, fixes labelling issue on reverse strand.
author peterjc
date Tue, 29 Jan 2013 10:19:01 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/get_orf_input.t11_open_prot_out.fasta	Tue Jan 29 10:19:01 2013 -0500
@@ -0,0 +1,20 @@
+>alpha|CDS1 length 87 aa, 264 bp, from 68..331 of alpha three forward CDS using table 1
+MXXXXXXXXXXXKKKKKKKKKKKKKKKKNPPPPPPPPPPPPPPPPPGGGGGGGGGGGGGG
+GGGFFFFFFFFFFFFFFFFXXXXXXXX
+>alpha|CDS2 length 84 aa, 255 bp, from 72..326 of alpha three forward CDS using table 1
+MXXXXXXXXXXKKKKKKKKKKKKKKKKTPPPPPPPPPPPPPPPPRGGGGGGGGGGGGGGG
+GVFFFFFFFFFFFFFFFFXXXXXX
+>alpha|CDS3 length 86 aa, 261 bp, from 76..336 of alpha three forward CDS using table 1
+MXXXXXXXXKKKKKKKKKKKKKKKKKPPPPPPPPPPPPPPPPPGGGGGGGGGGGGGGGGG
+FFFFFFFFFFFFFFFFFXXXXXXXXX
+>beta|CDS1 length 87 aa, 264 bp, from 69..332 of beta three forward CDS using table 11
+MXXXXXXXXXXXKKKKKKKKKKKKKKKKTPPPPPPPPPPPPPPPPRGGGGGGGGGGGGGG
+GGVFFFFFFFFFFFFFFFFXXXXXXXX
+>beta|CDS2 length 84 aa, 255 bp, from 73..327 of beta three forward CDS using table 11
+MXXXXXXXXXKKKKKKKKKKKKKKKKKPPPPPPPPPPPPPPPPPGGGGGGGGGGGGGGGG
+GFFFFFFFFFFFFFFFFFXXXXXX
+>beta|CDS3 length 86 aa, 261 bp, from 77..337 of beta three forward CDS using table 11
+MXXXXXXXXKKKKKKKKKKKKKKKKNPPPPPPPPPPPPPPPPPGGGGGGGGGGGGGGGGG
+FFFFFFFFFFFFFFFFXXXXXXXXXX
+>beta|CDS4 length 25 aa, 75 bp, from 334..408 of beta three forward CDS using table 11
+MXXXXXXXFFFFFFFFFFFFFFFFF