Mercurial > repos > peterjc > get_orfs_or_cdss
diff tools/get_orfs_or_cdss/README.rst @ 9:a06ad07431ba draft
v0.2.1 Adds table 24; Depends on Biopython 1.67 via Tool Shed package or bioconda.
author | peterjc |
---|---|
date | Wed, 10 May 2017 13:24:46 -0400 |
parents | 09a8be9247ca |
children | 01b0488d9cfb |
line wrap: on
line diff
--- a/tools/get_orfs_or_cdss/README.rst Sat Jan 09 23:42:32 2016 -0500 +++ b/tools/get_orfs_or_cdss/README.rst Wed May 10 13:24:46 2017 -0400 @@ -1,7 +1,7 @@ Galaxy tool to find ORFs or simple CDSs ======================================= -This tool is copyright 2011-2015 by Peter Cock, The James Hutton Institute +This tool is copyright 2011-2017 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. Additions copyright 2015-2016 by Eric Rasche. See the licence text below (MIT licence). @@ -77,6 +77,9 @@ - Added NCBI genetic code table 24, Pterobranchia Mitochondrial. v0.1.1 - Reorder XML elements (internal change only). v0.2.0 - Tool now also outputs GFF3 formatted calls (Eric Rasche). +v0.2.1 - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda. + - Added NCBI genetic code table 24, Candidate Division SR1 and + Gracilibacteria. ======= ====================================================================== @@ -93,17 +96,17 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/get_orfs_or_cdss/ + $ planemo shed_update -t testtoolshed --check_diff tools/get_orfs_or_cdss/ ... or:: - $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/get_orfs_or_cdss/ + $ planemo shed_update -t toolshed --check_diff tools/get_orfs_or_cdss/ ... To just build and check the tar ball, use:: - $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/get_orfs_or_cdss/ + $ planemo shed_upload --tar_only tools/get_orfs_or_cdss/ ... $ tar -tzf shed_upload.tar.gz test-data/Ssuis.fasta