Mercurial > repos > peterjc > get_orfs_or_cdss
diff tools/get_orfs_or_cdss/get_orfs_or_cdss.py @ 9:a06ad07431ba draft
v0.2.1 Adds table 24; Depends on Biopython 1.67 via Tool Shed package or bioconda.
author | peterjc |
---|---|
date | Wed, 10 May 2017 13:24:46 -0400 |
parents | 09a8be9247ca |
children | d51db443aaa4 |
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--- a/tools/get_orfs_or_cdss/get_orfs_or_cdss.py Sat Jan 09 23:42:32 2016 -0500 +++ b/tools/get_orfs_or_cdss/get_orfs_or_cdss.py Wed May 10 13:24:46 2017 -0400 @@ -17,8 +17,10 @@ See accompanying text file for licence details (MIT licence). """ + +import re import sys -import re + from optparse import OptionParser usage = """Use as follows: @@ -210,6 +212,7 @@ raise StopIteration yield values[0] + if options.mode == "all": get_peptides = get_all_peptides elif options.mode == "top":