comparison tools/mira4_0/README.rst @ 4:1713289d9908 draft default tip

v0.0.11 tweak for use with bioconda dependencies

3:a4f602cc3aa9

Galaxy wrapper for the MIRA assembly program (v4.0)
===================================================

This tool is copyright 2011-2015 by Peter Cock, The James Hutton Institute
(formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
See the licence text below (MIT licence).

This tool is a short Python script (to collect the MIRA output and move it
to where Galaxy expects the files) and associated Galaxy wrapper XML file.

        - Use the ``format_source=...`` tag in the MIRA bait wrapper.
        - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
        - MIRA 4.0.2 dependency now declared via dedicated Tool Shed package.
v0.0.8  - Renamed folder now have a MIRA 4.9.x wrapper (internal change only).
v0.0.9  - Additional unit tests now covering ``miraconvert``.
        - Was missing ``mirabait`` wrapper since move to using Planemo.
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Developers
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4:1713289d9908

Galaxy wrapper for the MIRA assembly program (v4.0)
===================================================

This tool is copyright 2011-2016 by Peter Cock, The James Hutton Institute
(formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
See the licence text below (MIT licence).

This tool is a short Python script (to collect the MIRA output and move it
to where Galaxy expects the files) and associated Galaxy wrapper XML file.

        - Use the ``format_source=...`` tag in the MIRA bait wrapper.
        - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
        - MIRA 4.0.2 dependency now declared via dedicated Tool Shed package.
v0.0.8  - Renamed folder now have a MIRA 4.9.x wrapper (internal change only).
v0.0.9  - Additional unit tests now covering ``miraconvert``.
        - Re-include missing ``mirabait`` wrapper (accidentally left out when
          changed to using Planemo for uploading to the Tool Shed).
v0.0.10 - Python 3 compatible syntax (internal change only).
        - Use ``<command detect_errors="aggressive">`` (internal change only).
        - Single quote command line arguments (internal change only).
v0.0.11 - For compatibility with MIRA installed from the BioConda package,
          if ``MIRA4$`` is not set, assume binaries are on the ``$PATH``.
======= ======================================================================


Developers
==========