Mercurial > repos > peterjc > mira_assembler
comparison tools/sr_assembly/mira.xml @ 6:3e7eca1f5d04 draft
MIRA wrapper v0.0.5 with <version_command> support and check for MIRA V3.4
| author | peterjc |
|---|---|
| date | Fri, 01 Feb 2013 10:34:21 -0500 |
| parents | 216bf640baaf |
| children | 4d3f94dfb857 |
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| 5:216bf640baaf | 6:3e7eca1f5d04 |
|---|---|
| 1 <tool id="mira_assembler" name="Assemble with MIRA" version="0.0.4"> | 1 <tool id="mira_assembler" name="Assemble with MIRA" version="0.0.5"> |
| 2 <description>Takes Sanger, Roche, Illumina, and Ion Torrent data</description> | 2 <description>Takes Sanger, Roche, Illumina, and Ion Torrent data</description> |
| 3 <version_command interpreter="python">mira.py -v</version_command> | |
| 3 <command interpreter="python">mira.py mira $out_fasta $out_qual $out_ace $out_caf $out_wig $out_log | 4 <command interpreter="python">mira.py mira $out_fasta $out_qual $out_ace $out_caf $out_wig $out_log |
| 4 ##Give the wrapper script list of output filenames, then the mira command... | 5 ##Give the wrapper script list of output filenames, then the mira command... |
| 5 mira --job=$job_method,$job_type,$job_quality | 6 mira --job=$job_method,$job_type,$job_quality |
| 6 | 7 |
| 7 ##Input files | 8 ##Input files |