Mercurial > repos > peterjc > mira_assembler
diff tools/mira3/README.rst @ 11:e59904c855ae draft
Uploaded v0.0.10, adds a test and updated download URL
| author | peterjc |
|---|---|
| date | Wed, 30 Apr 2014 07:21:57 -0400 |
| parents | a2fb1e67bd11 |
| children | 63ebe9726219 |
line wrap: on
line diff
--- a/tools/mira3/README.rst Thu Jan 30 13:21:21 2014 -0500 +++ b/tools/mira3/README.rst Wed Apr 30 07:21:57 2014 -0400 @@ -17,7 +17,7 @@ ====================== This should be straightforward, Galaxy should automatically download and -install the precompiled binary for MIRA v3.4.0 for the Galaxy wrapper, +install the precompiled binary for MIRA v3.4.1.1 for the Galaxy wrapper, and run any tests. @@ -26,12 +26,12 @@ There are just two Galaxy files to install: -* mira.py (the Python script) -* mira.xml (the Galaxy tool definition) +* ``mira.py`` (the Python script) +* ``mira.xml`` (the Galaxy tool definition) -The suggested location is a new tools/mira3 folder. You will also need to -modify the tools_conf.xml file to tell Galaxy to offer the tool, and also do -this to tools_conf.xml.sample in order to run any tests:: +The suggested location is a new ``tools/mira3`` folder. You will also need to +modify the ``tools_conf.xml`` file to tell Galaxy to offer the tool, and also do +this to ``tools_conf.xml.sample`` in order to run any tests:: <tool file="mira3/mira.xml" /> @@ -74,7 +74,9 @@ - Updated citation information (Cock et al. 2013). - Development moved to GitHub, https://github.com/peterjc/pico_galaxy v0.0.9 - Renamed folder mira_assembler to mira3 (see also MIRA 4 wrapper). - - Correct path issue in automated dependency installation + - Correct path issue in automated dependency installation. +v0.0.10 - Added a functional test. + - Updated URL for automated installation of MIRA v3.4.1.1 ======= ====================================================================== @@ -90,7 +92,7 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder:: - $ tar -czf mira3_wrapper.tar.gz tools/mira3/README.rst tools/mira3/mira.xml tools/mira3/mira.py tools/mira3/tool_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta + $ tar -czf mira3_wrapper.tar.gz tools/mira3/README.rst tools/mira3/mira.xml tools/mira3/mira.py tools/mira3/tool_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta test-data/empty_file.dat Check this worked:: @@ -101,6 +103,7 @@ tools/mira3/tool_dependencies.xml test-data/tvc_mini.fastq test-data/tvc_contigs.fasta + test-data/empty_file.dat Licence (MIT)