Mercurial > repos > peterjc > mummer
comparison tools/mummer/README.rst @ 6:d9f3d4779507 draft default tip
v0.0.7 stricter error checking; record gnuplot version
| author | peterjc |
|---|---|
| date | Wed, 10 May 2017 12:14:49 -0400 |
| parents | 683ea5ab0008 |
| children |
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| 5:683ea5ab0008 | 6:d9f3d4779507 |
|---|---|
| 65 - Test case added. | 65 - Test case added. |
| 66 v0.0.5 - Reorder XML elements (internal change only). | 66 v0.0.5 - Reorder XML elements (internal change only). |
| 67 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). | 67 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). |
| 68 v0.0.6 - PEP8 style changes to Python script (internal change only). | 68 v0.0.6 - PEP8 style changes to Python script (internal change only). |
| 69 - Fixed display of input parameter help text. | 69 - Fixed display of input parameter help text. |
| 70 v0.0.7 - Use ``<command detect_errors="aggressive">`` (internal change only). | |
| 71 - Single quote command line arguments (internal change only). | |
| 72 - Wrapper script catches missing output explicitly. | |
| 73 - Capture gnuplot version as well. | |
| 70 ======= ====================================================================== | 74 ======= ====================================================================== |
| 71 | 75 |
| 72 | 76 |
| 73 Developers | 77 Developers |
| 74 ========== | 78 ========== |
| 79 | 83 |
| 80 For pushing a release to the test or main "Galaxy Tool Shed", use the following | 84 For pushing a release to the test or main "Galaxy Tool Shed", use the following |
| 81 Planemo commands (which requires you have set your Tool Shed access details in | 85 Planemo commands (which requires you have set your Tool Shed access details in |
| 82 ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: | 86 ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: |
| 83 | 87 |
| 84 $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/mummer/ | 88 $ planemo shed_update -t testtoolshed --check_diff tools/mummer/ |
| 85 ... | 89 ... |
| 86 | 90 |
| 87 or:: | 91 or:: |
| 88 | 92 |
| 89 $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/mummer/ | 93 $ planemo shed_update -t toolshed --check_diff tools/mummer/ |
| 90 ... | 94 ... |
| 91 | 95 |
| 92 To just build and check the tar ball, use:: | 96 To just build and check the tar ball, use:: |
| 93 | 97 |
| 94 $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/mummer/ | 98 $ planemo shed_upload --tar_only tools/mummer/ |
| 95 ... | 99 ... |
| 96 $ tar -tzf shed_upload.tar.gz | 100 $ tar -tzf shed_upload.tar.gz |
| 97 test-data/magic.pdf | 101 test-data/magic.pdf |
| 98 test-data/magic.png | 102 test-data/magic.png |
| 99 test-data/rhodopsin_nucs.fasta | 103 test-data/rhodopsin_nucs.fasta |