Mercurial > repos > peterjc > mummer
diff tools/mummer/README.rst @ 1:b07aa90c95e6 draft
Uploaded v0.0.2, corrects typo on tool ID, adds citation markup.
author | peterjc |
---|---|
date | Tue, 28 Oct 2014 06:57:35 -0400 |
parents | b0551f2a5986 |
children | 8f93c1b7609e |
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--- a/tools/mummer/README.rst Mon Oct 27 12:56:55 2014 -0400 +++ b/tools/mummer/README.rst Tue Oct 28 06:57:35 2014 -0400 @@ -1,11 +1,11 @@ -Galaxy wrapper for EffectiveT3 v1.0.1 -===================================== +Galaxy wrapper for drawing dotplots using MUMmer 3 +================================================== This wrapper is copyright 2014 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below. -This is a wrapper for the command suite MUMmer v3. +This is a dotplot tool wrapping functionality from the MUMmer v3 suite. S. Kurtz et al. (2004). Versatile and open software for comparing large genomes. @@ -21,7 +21,8 @@ This should be straightforward, Galaxy should automatically download and install the MUMmer files. -It also needs gnuplot, and ps2pdf. +It also needs the tools ``gnuplot`` and ``ps2pdf`` to be installed and on the +system ``$PATH``. Manual Installation @@ -46,7 +47,7 @@ If you wish to run the unit tests, also add this to ``tools_conf.xml.sample`` and move/copy the ``test-data`` files under Galaxy's ``test-data`` folder. Then:: - $ ./run_functional_tests.sh -id mummer_wrapper + $ ./run_tests.sh -id mummerplot_wrapper That's it. @@ -57,7 +58,9 @@ ======= ====================================================================== Version Changes ------- ---------------------------------------------------------------------- -v0.0.1 - Initial public release +v0.0.1 - Initial public release. +v0.0.2 - Correct typo in Tool identifier. + - Include MUMmer citation in Galaxy XML markup. ======= ======================================================================