Mercurial > repos > peterjc > nlstradamus

view tools/nlstradamus/tool_dependencies.xml @ 5:e8f15b0136cd draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
v0.0.11 dependency packaging update
author peterjc
date Wed, 01 Feb 2017 09:16:28 -0500
parents 1458e60f3fd0
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="NLStradamus" version="1.8">
        <install version="1.0">
            <actions>
                <!-- Original URL http://www.moseslab.csb.utoronto.ca/NLStradamus/NLStradamus/NLStradamus.1.8.tar.gz -->
                <action type="download_by_url" sha256sum="73ef3a77c6c1132f213d44bc2a48a8182e652b01b8cd83d06b30832a682ec0d0" target_filename="NLStradamus.1.8.tar.gz">https://depot.galaxyproject.org/software/NLStradamus/NLStradamus_1.8_src_all.tar.gz</action>
                <!-- Although v1.7 used a subfolder in the tar-ball, v1.8 did not -->
                <action type="shell_command">g++ NLStradamus.cpp -o NLStradamus -O3</action>
                <action type="move_file"><source>NLStradamus</source><destination>$INSTALL_DIR/</destination></action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
This downloads NLStradamus v1.8 from this folder,
http://www.moseslab.csb.utoronto.ca/NLStradamus/NLStradamus/

The C++ tool is compiled as described in the README_C.txt file, using g++, and included in the $PATH.

The older slower Perl implementation is not installed.
        </readme>
    </package>
</tool_dependency>