changeset 0:8564aa1dbbf5 draft

planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_4_0_2 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Aug 05 11:30:24 2015 -0400
@@ -0,0 +1,55 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="MIRA" version="4.0.2">
+        <install version="1.0">
+            <actions_group>
+                <!-- Download the binaries for MIRA compatible with 64-bit OSX. -->
+                <actions architecture="x86_64" os="darwin">
+                    <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_4.0.2_darwin13.1.0_x86_64_static.tar.bz2</action>
+                    <action type="move_directory_files">
+                         <source_directory>bin</source_directory>
+                         <destination_directory>$INSTALL_DIR</destination_directory>
+                     </action>
+                </actions>
+                <!-- Download the binaries for MIRA compatible with 64-bit Linux. -->
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_4.0.2_linux-gnu_x86_64_static.tar.bz2</action>
+                    <action type="move_directory_files">
+                        <source_directory>bin</source_directory>
+                        <destination_directory>$INSTALL_DIR</destination_directory>
+                    </action>
+                </actions>
+                <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
+                <actions>
+                    <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
+                    <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
+                    <action type="shell_command">uname</action>
+                    <action type="shell_command">arch</action>
+                    <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action>
+                    <action type="shell_command">echo "via https://github.com/peterjc/pico_galaxy/issues - thank you!"</action>
+                    <action type="shell_command">false</action>
+                    <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
+                </actions>
+                <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="MIRA4">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions_group>
+        </install>
+        <readme>
+Downloads MIRA v4.0.2 from Sourceforge, requesting Bastien's precompiled binaries
+for 64 bit (x86_64) Linux or Mac OS X. Other platforms where compilation from
+source would be required (e.g. 32 bit Linux) are not supported by this automated
+installation script.
+
+http://chevreux.org/projects_mira.html
+http://sourceforge.net/projects/mira-assembler/
+
+The environment variable ``$MIRA4`` will point to the folder containing the binaries,
+which is also pre-pended to the``$PATH`` variable.
+        </readme>
+    </package>
+</tool_dependency>