comparison tool_dependencies.xml @ 3:4eaac2545faa draft default tip

MIRA 4.9.5 not on sourceforge anymore

2:edb0eb8d8921

<tool_dependency>
    <package name="MIRA" version="4.9.5">
        <install version="1.0">
            <actions_group>
                <!-- Download the binaries for MIRA compatible with 64-bit OSX. -->
                <actions architecture="x86_64" os="darwin">
                    <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/development/mira_4.9.5_2_darwin14.3.0_x86_64_static.tar.bz2</action>
                    <action type="move_directory_files">
                         <source_directory>bin</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
                     </action>
                </actions>
                <!-- Download the binaries for MIRA compatible with 64-bit Linux. -->
                <actions architecture="x86_64" os="linux">
                    <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/development/mira_4.9.5_2_linux-gnu_x86_64_static.tar.bz2</action>
                    <action type="move_directory_files">
                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>

                    <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
                    <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
                    <action type="shell_command">uname</action>
                    <action type="shell_command">arch</action>
                    <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action>
                    <action type="shell_command">echo "via https://github.com/peterjc/pico_galaxy/issues - thank you!"</action>
                    <action type="shell_command">false</action>
                    <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
                </actions>
                <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
                </action>
                <!-- Wrapper requires trailing slash on $MIRA4_9 so make sure there is one (double trailing slash is harmless) -->
                <action type="set_environment">
                    <environment_variable action="set_to" name="MIRA4_9">$INSTALL_DIR/</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme>
Downloads MIRA v4.9.5 from Sourceforge, requesting Bastien's precompiled binaries
for 64 bit (x86_64) Linux or Mac OS X. Other platforms where compilation from
source would be required (e.g. 32 bit Linux) are not supported by this automated
installation script.

http://chevreux.org/projects_mira.html
http://sourceforge.net/projects/mira-assembler/

The environment variable ``$MIRA4_9`` will point to the folder containing the
binaries, which is also pre-pended to the``$PATH`` variable.
        </readme>
    </package>
</tool_dependency>

3:4eaac2545faa

<tool_dependency>
    <package name="MIRA" version="4.9.5">
        <install version="1.0">
            <actions_group>
                <!-- Download the binaries for MIRA compatible with 64-bit OSX. -->
                <!-- Currently unavailable...
                <actions architecture="x86_64" os="darwin">
                    <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/development/mira_4.9.5_2_darwin14.3.0_x86_64_static.tar.bz2</action>
                    <action type="move_directory_files">
                         <source_directory>bin</source_directory>
                         <destination_directory>$INSTALL_DIR</destination_directory>
                     </action>
                </actions>
                -->
                <!-- Download the binaries for MIRA compatible with 64-bit Linux. -->
                <actions architecture="x86_64" os="linux">
                    <action type="download_by_url" sha256sum="3848885cb041cd9bf7aa8f220dd3f084443f5060fa433b669f7d28880ba4c61f">https://depot.galaxyproject.org/software/mira/mira_4.9.5_linux_x64.tar.bz2</action>
                    <action type="move_directory_files">
                        <source_directory>bin</source_directory>
                        <destination_directory>$INSTALL_DIR</destination_directory>
                    </action>
                </actions>

                    <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action>
                    <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action>
                    <action type="shell_command">uname</action>
                    <action type="shell_command">arch</action>
                    <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action>
                    <action type="shell_command">echo "via https://github.com/peterjc/galaxy_mira/issues - thank you!"</action>
                    <action type="shell_command">false</action>
                    <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
                </actions>
                <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
                </action>
                <!-- Note we append a trailing slash as currently expected by the wrapper XML file -->
                <action type="set_environment">
                    <environment_variable action="set_to" name="MIRA4_9">$INSTALL_DIR/</environment_variable>
                </action>
            </actions_group>
        </install>
        <readme>
Downloads MIRA v4.9.5 from Sourceforge, requesting Bastien's precompiled binaries
for 64 bit (x86_64) Linux. Currently the Mac OS X binaries are not available.

Other platforms where compilation from source would be required (e.g. 32 bit Linux)
are not supported by this automated installation script.

http://chevreux.org/projects_mira.html
http://sourceforge.net/projects/mira-assembler/

The environment variable ``$MIRA4_9`` will point to the folder containing the
binaries (with a trailing slash), and this is also pre-pended to the``$PATH``
variable.
        </readme>
    </package>
</tool_dependency>