annotate rxlr_venn_workflow.ga @ 4:3c280e01b920 draft

Uploaded v0.0.2, bump tool version numbers to fix warning about Filter1 parameter, adding link to Tool Shed in annotation. No functional changes.
author peterjc
date Wed, 21 Aug 2013 13:01:51 -0400
parents 0e7c07ff11f9
children 4726b640f221
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1 {
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2 "a_galaxy_workflow": "true",
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3c280e01b920 Uploaded v0.0.2, bump tool version numbers to fix warning about Filter1 parameter, adding link to Tool Shed in annotation. No functional changes.
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3 "annotation": "Takes a protein FASTA file, runs three different RXLR motif methods, draws a Venn diagram comparing them, and creates a FASTA file of those proteins passing all three screens.<br />\n<br />\nThis workflow is <a href=\"http://toolshed.g2.bx.psu.edu/view/peterjc/rxlr_venn_workflow\" target=\"_blank\">available on the Galaxy Tool Shed</a> with a README file giving more information including sample data, and full citation details (Cock and Pritchard 2013).",
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4 "format-version": "0.1",
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5 "name": "3 RXLR methods, Venn Diagram, overlap FASTA",
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6 "steps": {
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12 {
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13 "description": "",
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15 }
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16 ],
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22 },
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33 "input_connections": {
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34 "fasta_file": {
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36 "output_name": "output"
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37 }
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38 },
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39 "inputs": [],
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40 "name": "RXLR Motifs",
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41 "outputs": [
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42 {
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43 "name": "tabular_file",
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56 }
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57 },
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58 "tool_errors": null,
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59 "tool_id": "rxlr_motifs",
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3c280e01b920 Uploaded v0.0.2, bump tool version numbers to fix warning about Filter1 parameter, adding link to Tool Shed in annotation. No functional changes.
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60 "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Whisson2007\\\"\"}",
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61 "tool_version": "0.0.7",
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62 "type": "tool",
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64 },
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74 "inputs": [],
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75 "name": "RXLR Motifs",
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77 {
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80 }
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81 ],
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93 "tool_errors": null,
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94 "tool_id": "rxlr_motifs",
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3c280e01b920 Uploaded v0.0.2, bump tool version numbers to fix warning about Filter1 parameter, adding link to Tool Shed in annotation. No functional changes.
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95 "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Win2007\\\"\"}",
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96 "tool_version": "0.0.7",
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97 "type": "tool",
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103 "input_connections": {
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104 "fasta_file": {
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105 "id": 0,
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106 "output_name": "output"
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107 }
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108 },
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109 "inputs": [],
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110 "name": "RXLR Motifs",
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112 {
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113 "name": "tabular_file",
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114 "type": "tabular"
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115 }
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116 ],
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129 "tool_id": "rxlr_motifs",
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130 "tool_state": "{\"__page__\": 0, \"fasta_file\": \"null\", \"__rerun_remap_job_id__\": null, \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"model\": \"\\\"Bhattacharjee2006\\\"\"}",
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131 "tool_version": "0.0.7",
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132 "type": "tool",
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142 }
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144 "inputs": [],
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0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
455 "RenameDatasetActionoutput_pos": {
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
456 "action_arguments": {
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
457 "newname": "RXLR by all 3 methods"
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
458 },
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
459 "action_type": "RenameDatasetAction",
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
460 "output_name": "output_pos"
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
461 }
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
462 },
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
463 "tool_errors": null,
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
464 "tool_id": "seq_filter_by_id",
4
3c280e01b920 Uploaded v0.0.2, bump tool version numbers to fix warning about Filter1 parameter, adding link to Tool Shed in annotation. No functional changes.
peterjc
parents: 0
diff changeset
465 "tool_state": "{\"__page__\": 0, \"output_choice_cond\": \"{\\\"output_choice\\\": \\\"pos\\\", \\\"__current_case__\\\": 1}\", \"input_file\": \"null\", \"__rerun_remap_job_id__\": null, \"input_tabular\": \"null\", \"chromInfo\": \"\\\"/opt/galaxy-dist/tool-data/shared/ucsc/chrom/?.len\\\"\", \"columns\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": [\\\"1\\\"]}\"}",
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0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
466 "tool_version": "0.0.5",
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
467 "type": "tool",
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
468 "user_outputs": []
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
469 }
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
470 }
0e7c07ff11f9 Uploaded v0.0.1, includes README file and dependencies.
peterjc
parents:
diff changeset
471 }