Mercurial > repos > peterjc > sample_seqs

annotate test-data/get_orf_input.Suis_ORF.prot.sample_C10.fasta @ 7:86710edcec02 draft

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v0.2.5 use <command detect_errors="aggressive"> and other internal changes
author peterjc
date Thu, 11 May 2017 12:20:59 -0400
parents da64f6a9e32b
children
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2
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
1 >Streptococcus_suis|ORF1 length 457 aa, 1374 bp, from 1..1374 of Streptococcus_suis
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
2 MNQEQLFWQRFIELAKVNFKPSIYDFYVADAKLLGINQQVANIFLNRPFKKDFWEKNFEE
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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3 LMIAASFESYGEPLTIQYQFTEDEQEIRNTTNTRSSIVHQVQTLEPATPQETFKPVHSDI
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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4 KSQYTFANFVQGDNNHWAKAAALAVSDNLGELYNPLFIFGGPGLGKTHILNAIGNKVLAD
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
5 NPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFFH
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
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6 TFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFETRIAILRNKCEN
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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7 LPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLIATMRQLSEISVEVAAEAIRSRKQTNP
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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8 QNMVIPIEKIQTEVGNFYGVSLKELKGSKRVQHIVHARQVAMFLAREMTDNSLPKIGKEF
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
9 GNRDHTTVMHAYNKIKTLLLDDENLEIEITSIKNKLR
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
10 >Streptococcus_suis|ORF292 length 216 aa, 651 bp, from 185183..185833 of Streptococcus_suis
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
11 AVGKDHLTLDPISVEQIIAVMPVLIVVTAGAVQGSTLGSQSFFVGCFIAEEVTCLQTLGV
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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12 GQGGQAVQIFAWIATRAGHQPVFTVVVIPRGNPCFCDDDFQSVHASCCQGIGHGTEIRQS
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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13 RRRYLTIGPIGLDLKRASVVCVGLGATVQPVNHRFIALHLLVVARCHVARRAQRANTRHM
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
14 EAGKAASEEVVIEGVRSNVPQFFSSRADRQVPLVQV
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
15 >Streptococcus_suis|ORF583 length 391 aa, 1176 bp, from 397805..398980 of Streptococcus_suis
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
16 RKKMKKQFELIATAAAGLEAVVGREIRNLGYECQVENGRVRFQGDVKSIIETNIWLRSAD
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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17 RIKIIVGQFPAKTFEELFQGVFNLDWENYLPLGCKFPISKAKCVKSKLHNEPSVQAISKK
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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18 AVVKKLQKHFSRPEGVPLQEMGAEFKIEVSILKDVATVMIDTTGSSLFKRGYRVEKGGAP
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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19 IKENMAAAILQLSNWYPDKPLIDPTCGSGTFCIEAAMLAKNIAPGLKRSFAFEEWPWVED
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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20 QLVVALRKEAQASIKTDLVLDITGSDIDARMIEIAKKNAFAAGVEQDIVFKQMRVQDLRT
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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21 DKINGVIISNPPYGERLLDDEAIVTLYREMGETFEPLKTWSKFILTSDELFETRFGQQAD
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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22 KKRKLYNGTLKVDLYQFFGQRVKRQVQEVQG
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
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23 >Streptococcus_suis|ORF874 length 113 aa, 342 bp, from complement(605625..605966) of Streptococcus_suis
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
24 VSNIVTAITTVNQSQAFQLAKVFFDSQVVRQHLSWVPCICQTIPYWHTGEFCQFFHHFLT
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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25 ETTEFNTVEHTSQNFSSIFCRFFLTKLDVICTKIFWMGTKVNRCYCEGSTSTC
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
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26 >Streptococcus_suis|ORF1165 length 105 aa, 318 bp, from 811613..811930 of Streptococcus_suis
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
27 AYNESVKRKECHLMKQVNMSKIINYLTILGLLILLSAFFLDNWIRDWFFPSSWGNVATML
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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28 ILPLLGALILILSIYYKKLWTGLISIFLIISFPLIFGIGYFIFGP
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
29 >Streptococcus_suis|ORF1456 length 116 aa, 351 bp, from complement(1027944..1028294) of Streptococcus_suis
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
30 YGNACNSRPPTCDKSYSCWETLIYMGLNLVQFHFLISWYNGNMVISILQFFSHILFIYLA
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
31 HHLLVTTVDWSRWLKVTGDNQRKINLLILFLAIALGYLVSTFFLELLMMGRSFANM
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
32 >Streptococcus_suis|ORF1747 length 335 aa, 1008 bp, from complement(1225218..1226225) of Streptococcus_suis
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
33 RMLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARG
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
34 LASKKTTTVGVVIPNIANAYFATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFS
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
35 KQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPSVNIDYAAASVDAVNLLAK
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
36 NNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILN
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
37 AGATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDI
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
38 GAIAMRMLTKIMHKEELENREVVLNHGIKVRKSTK
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
39 >Streptococcus_suis|ORF2038 length 112 aa, 339 bp, from 1422849..1423187 of Streptococcus_suis
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
40 SSKMPAVLQRTSTDWHQEKTGDKSPVRSSCRKWKSPAKSGLLARSIPKTRQPFSKKIPAC
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
41 ARPMPLETPVMRAVLVMDFYPVGRKDIARGRAPHGEAFTLAGHVDEEIGRRL
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
42 >Streptococcus_suis|ORF2329 length 160 aa, 483 bp, from 1612284..1612766 of Streptococcus_suis
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
43 LIETNWFHHLTGQEGLDVLFFHNLGFRITDQLYLEVRKFHLLQGLSQLLRRWSQESRVKG
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
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diff changeset
44 ARYIERNHPLDTCFLQQFNRLIHCSHLASDDDLGWCVVVGWGNNPRGNSRTDFFNQVDIC
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
45 VENSNHLTSPCWRSQFHIFTTLSNQGNRIFKGQSSRCHQS
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
46 >Streptococcus_suis|ORF2620 length 192 aa, 579 bp, from complement(1803558..1804136) of Streptococcus_suis
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
47 RLKIPCFQRKEVTMYDSFDKGWFVLQTYSGYENKVKENLLQRAHTYNMLENILRVEIPTQ
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
48 TVQVEKNGEVKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLE
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
49 EEIRQILVSMGQTVQEFDIDVKVGDTVRIIDGAFTDYTGKITEIDNNKVKMVISMFGNDT
da64f6a9e32b Uploaded v0.2.0, adds desired count mode
peterjc
parents:
diff changeset
50 IAEVNLSQIAEL