comparison tools/sample_seqs/sample_seqs.py @ 3:02c13ef1a669 draft

Uploaded v0.2.1, fixed missing test file, more tests.

2:da64f6a9e32b

                  default=False, action="store_true",
                  help="Show version and quit")
options, args = parser.parse_args()

if options.version:
    print("v0.2.0")
    sys.exit(0)

in_file = options.input
out_file = options.output
interleaved = options.interleaved

    except:
        sys_exit("Bad -c count argument %r" % options.count)
    if N < 1:
        sys_exit("Bad -c count argument %r" % options.count)
    total = count_sequences(in_file, seq_format)
    print("Input file has %i sequences" % total)
    if interleaved:
        # Paired
        if total % 2:
            sys_exit("Paired mode, but input file has an odd number of sequences: %i"
                     % total)

3:02c13ef1a669

                  default=False, action="store_true",
                  help="Show version and quit")
options, args = parser.parse_args()

if options.version:
    print("v0.2.1")
    sys.exit(0)

in_file = options.input
out_file = options.output
interleaved = options.interleaved

    except:
        sys_exit("Bad -c count argument %r" % options.count)
    if N < 1:
        sys_exit("Bad -c count argument %r" % options.count)
    total = count_sequences(in_file, seq_format)
    sys.stderr.write("Input file has %i sequences\n" % total)
    if interleaved:
        # Paired
        if total % 2:
            sys_exit("Paired mode, but input file has an odd number of sequences: %i"
                     % total)