diff tools/sample_seqs/README.rst @ 5:6b71ad5d43fb draft

v0.2.3 clarified help, internal cleanup of Python script

--- a/tools/sample_seqs/README.rst	Wed Aug 05 12:30:18 2015 -0400
+++ b/tools/sample_seqs/README.rst	Wed Feb 01 09:39:36 2017 -0500
@@ -67,8 +67,10 @@
         - Included testing of stdout messages.
         - Includes testing of failure modes.
 v0.2.2  - Reorder XML elements (internal change only).
-        - Use ``format_source=...``` tag.
+        - Use ``format_source=...`` tag.
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
+v0.2.3  - Do the Biopython imports at the script start (internal change only).
+        - Clarify paired read example in help text.
 ======= ======================================================================
 
 
@@ -82,12 +84,12 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/sample_seqs/
+    $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/sample_seqs/
     ...
 
 or::
 
-    $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/sample_seqs/
+    $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/sample_seqs/
     ...
 
 To just build and check the tar ball, use::