diff tools/samtools_depad/README.rst @ 2:02572789ef6c draft

v0.0.4 Internal changes to command line handling

--- a/tools/samtools_depad/README.rst	Wed May 13 10:15:02 2015 -0400
+++ b/tools/samtools_depad/README.rst	Tue May 16 09:29:05 2017 -0400
@@ -1,14 +1,14 @@
 Galaxy wrapper for samtools depad
 =================================
 
-This wrapper is copyright 2014-2015 by Peter Cock, The James Hutton Institute
+This wrapper is copyright 2014-2017 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 See the licence text below.
 
 This is a wrapper for part of the command line samtools suite, v0.1.19
 
 This wrapper is available from the Galaxy Tool Shed at:
-http://toolshed.g2.bx.psu.edu/view/peterjc/samtools_idxstats
+http://toolshed.g2.bx.psu.edu/view/peterjc/samtools_depad
 
 
 Automated Installation
@@ -54,6 +54,8 @@
         - Removed unused imports from Python wrapper script.
 v0.0.3  - Reorder XML elements (internal change only).
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
+v0.0.4  - Use ``<command detect_errors="aggressive">`` (internal change only).
+        - Single quote command line arguments (internal change only).
 ======= ======================================================================
 
 
@@ -67,17 +69,17 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_upload --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/samtools_depad/
+    $ planemo shed_update -t testtoolshed --check_diff tools/samtools_depad/
     ...
 
 or::
 
-    $ planemo shed_upload --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/samtools_depad/
+    $ planemo shed_update -t toolshed --check_diff tools/samtools_depad/
     ...
 
 To just build and check the tar ball, use::
 
-    $ planemo shed_upload --tar_only  ~/repositories/pico_galaxy/tools/samtools_depad/
+    $ planemo shed_upload --tar_only tools/samtools_depad/
     ...
     $ tar -tzf shed_upload.tar.gz
     test-data/sam_spec_padded.bam