comparison secreted_protein_workflow.ga @ 0:0ec2a079f68d draft

Uploaded v0.0.1, includes README file and dependencies.
author peterjc
date Mon, 06 May 2013 11:29:15 -0400
parents
children 3a0c0d1c388f
comparison
equal deleted inserted replaced
-1:000000000000 0:0ec2a079f68d
1 {
2 "a_galaxy_workflow": "true",
3 "annotation": "Runs SignalP v3.0 and TMHMM v2.0 to look for secreted proteins.",
4 "format-version": "0.1",
5 "name": "Find secreted proteins with TMHMM and SignalP",
6 "steps": {
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12 {
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14 "name": "Input Dataset"
15 }
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22 },
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29 },
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33 "input_connections": {
34 "fasta_file": {
35 "id": 0,
36 "output_name": "output"
37 }
38 },
39 "inputs": [
40 {
41 "description": "runtime parameter for tool SignalP 3.0",
42 "name": "organism"
43 }
44 ],
45 "name": "SignalP 3.0",
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66 "tool_version": "0.0.8",
67 "type": "tool",
68 "user_outputs": []
69 },
70 "2": {
71 "annotation": "Select proteins with predicted signal peptide (SignalP NN D-Score or HMM)",
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128 {
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130 "type": "fasta"
131 },
132 {
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135 }
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167 }
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191 "tool_version": "0.0.7",
192 "type": "tool",
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233 "tool_version": "1.1.0",
234 "type": "tool",
235 "user_outputs": []
236 },
237 "6": {
238 "annotation": "Select those sequences with no transmembrane helices (from those with signal peptides).",
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240 "input_connections": {
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244 },
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250 "inputs": [],
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256 },
257 {
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283 "tool_version": "0.0.1",
284 "type": "tool",
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286 }
287 }
288 }