comparison tools/seq_composition/seq_composition.xml @ 1:c0eb0e5792f3 draft

v0.0.2; internal changes for packaging

0:087a226e501e

<tool id="seq_composition" name="Sequence composition" version="0.0.1">
    <description>Count bases or amino-acids</description>
    <requirements>
        <requirement type="package" version="1.64">biopython</requirement>
        <requirement type="python-module">Bio</requirement>
    </requirements>
    <version_command interpreter="python">seq_composition.py --version</version_command>
    <command interpreter="python">
seq_composition.py -o "$output_file"
##For loop over inputs
#for i in $input_file
--$i.ext "${i}"
#end for
    </command>
    <stdio>
        <!-- Anything other than zero is an error -->
        <exit_code range="1:" />
        <exit_code range=":-1" />
    </stdio>
    <inputs>
        <param name="input_file" type="data" format="fasta,fastq,sff" multiple="true" label="Sequence file" help="FASTA, FASTQ, or SFF format." />
    </inputs>
    <outputs>
        <data name="output_file" format="tabular" label="Sequence composition ${on_string}"/>

1:c0eb0e5792f3

<tool id="seq_composition" name="Sequence composition" version="0.0.2">
    <description>Count bases or amino-acids</description>
    <requirements>
        <requirement type="package" version="1.64">biopython</requirement>
        <requirement type="python-module">Bio</requirement>
    </requirements>
    <stdio>
        <!-- Anything other than zero is an error -->
        <exit_code range="1:" />
        <exit_code range=":-1" />
    </stdio>
    <version_command interpreter="python">seq_composition.py --version</version_command>
    <command interpreter="python">
seq_composition.py -o "$output_file"
##For loop over inputs
#for i in $input_file
--$i.ext "${i}"
#end for
    </command>
    <inputs>
        <param name="input_file" type="data" format="fasta,fastq,sff" multiple="true" label="Sequence file" help="FASTA, FASTQ, or SFF format." />
    </inputs>
    <outputs>
        <data name="output_file" format="tabular" label="Sequence composition ${on_string}"/>