# HG changeset patch
# User peterjc
# Date 1494435822 14400
# Node ID 7a26bb4588066fe3cc8e8612ccefea8320a79d0f
# Parent  4283011f4be2e51c1d506aa5e4249562ce673d27
v0.0.4 using Biopython 1.67 via Tool Shed or (Bio)Conda

diff -r 4283011f4be2 -r 7a26bb458806 tools/seq_composition/README.rst
--- a/tools/seq_composition/README.rst	Wed Feb 01 10:00:22 2017 -0500
+++ b/tools/seq_composition/README.rst	Wed May 10 13:03:42 2017 -0400
@@ -61,6 +61,7 @@
 v0.0.2  - Reorder XML elements (internal change only).
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
 v0.0.3  - Python style updates (internal change only).
+v0.0.4  - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda.
 ======= ======================================================================
 
 
@@ -75,17 +76,17 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/seq_composition/
+    $ planemo shed_update -t testtoolshed --check_diff tools/seq_composition/
     ...
 
 or::
 
-    $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/seq_composition/
+    $ planemo shed_update -t toolshed --check_diff tools/seq_composition/
     ...
 
 To just build and check the tar ball, use::
 
-    $ planemo shed_upload --tar_only  ~/repositories/pico_galaxy/tools/seq_composition/
+    $ planemo shed_upload --tar_only tools/seq_composition/
     ...
     $ tar -tzf shed_upload.tar.gz 
     test-data/MID4_GLZRM4E04_rnd30_frclip.sff
diff -r 4283011f4be2 -r 7a26bb458806 tools/seq_composition/seq_composition.xml
--- a/tools/seq_composition/seq_composition.xml	Wed Feb 01 10:00:22 2017 -0500
+++ b/tools/seq_composition/seq_composition.xml	Wed May 10 13:03:42 2017 -0400
@@ -1,8 +1,7 @@
-<tool id="seq_composition" name="Sequence composition" version="0.0.3">
+<tool id="seq_composition" name="Sequence composition" version="0.0.4">
     <description>Count bases or amino-acids</description>
     <requirements>
-        <requirement type="package" version="1.64">biopython</requirement>
-        <requirement type="python-module">Bio</requirement>
+        <requirement type="package" version="1.67">biopython</requirement>
     </requirements>
     <stdio>
         <!-- Anything other than zero is an error -->
diff -r 4283011f4be2 -r 7a26bb458806 tools/seq_composition/tool_dependencies.xml
--- a/tools/seq_composition/tool_dependencies.xml	Wed Feb 01 10:00:22 2017 -0500
+++ b/tools/seq_composition/tool_dependencies.xml	Wed May 10 13:03:42 2017 -0400
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="biopython" version="1.64">
-        <repository changeset_revision="0c7526e8ea70" name="package_biopython_1_64" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <package name="biopython" version="1.67">
+        <repository changeset_revision="a42f244cce44" name="package_biopython_1_67" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>