comparison tools/seq_filter_by_id/seq_filter_by_id.py @ 8:2d4537dbf0bc draft

v0.2.6 Depend on Biopython 1.67 from Tool Shed or (Bio)conda

7:fb1313d79396

(formerly the Scottish Crop Research Institute, SCRI), UK. All rights reserved.
See accompanying text file for licence details (MIT license).

Use -v or --version to get the version, -h or --help for help.
"""
import os
import sys
import re
from optparse import OptionParser

# Parse Command Line
usage = """Use as follows:

    global name_warn
    if not name_warn and len(parts) > 1:
        name_warn = "WARNING: Some of your identifiers had white space in them, " + \
                    "using first word only. e.g.:\n%s\n" % name
    return parts[0]

if drop_suffices:
    def clean_name(name):
        """Remove suffix."""
        name = check_white_space(name)

8:2d4537dbf0bc

(formerly the Scottish Crop Research Institute, SCRI), UK. All rights reserved.
See accompanying text file for licence details (MIT license).

Use -v or --version to get the version, -h or --help for help.
"""

import os
import re
import sys

from optparse import OptionParser

# Parse Command Line
usage = """Use as follows:

    global name_warn
    if not name_warn and len(parts) > 1:
        name_warn = "WARNING: Some of your identifiers had white space in them, " + \
                    "using first word only. e.g.:\n%s\n" % name
    return parts[0]


if drop_suffices:
    def clean_name(name):
        """Remove suffix."""
        name = check_white_space(name)