# HG changeset patch # User peterjc # Date 1701337823 0 # Node ID 1d6c149ca2112b527c1b9c7478837fcb71514953 # Parent f82868a026eac23be8680578df3b5f77a5456959 Bump Biopython dependency diff -r f82868a026ea -r 1d6c149ca211 tools/seq_filter_by_mapping/README.rst --- a/tools/seq_filter_by_mapping/README.rst Fri Apr 16 22:22:47 2021 +0000 +++ b/tools/seq_filter_by_mapping/README.rst Thu Nov 30 09:50:23 2023 +0000 @@ -1,7 +1,7 @@ Galaxy tool to filter FASTA, FASTQ or SFF sequences by SAM/BAM mapping ====================================================================== -This tool is copyright 2014-2017 by Peter Cock, The James Hutton Institute +This tool is copyright 2014-2023 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below. @@ -72,6 +72,7 @@ - Single quote command line arguments (internal change only). v0.0.6 - Python 3 compatible print function. v0.0.7 - Script works on Python 2 and 3 (fixed input file mode) +v0.0.8 - Bumped Biopython dependency version for Python 3 fixes. ======= ====================================================================== diff -r f82868a026ea -r 1d6c149ca211 tools/seq_filter_by_mapping/seq_filter_by_mapping.xml --- a/tools/seq_filter_by_mapping/seq_filter_by_mapping.xml Fri Apr 16 22:22:47 2021 +0000 +++ b/tools/seq_filter_by_mapping/seq_filter_by_mapping.xml Thu Nov 30 09:50:23 2023 +0000 @@ -1,7 +1,7 @@ - + from SAM/BAM file - biopython + biopython samtools