Mercurial > repos > peterjc > seq_primer_clip
comparison tools/seq_primer_clip/README.rst @ 5:530c8d6fedd8 draft
v0.0.15 - internal changes
author | peterjc |
---|---|
date | Wed, 10 May 2017 13:09:52 -0400 |
parents | 9b074c1db68e |
children | b9dc7c967ee6 |
comparison
equal
deleted
inserted
replaced
4:9b074c1db68e | 5:530c8d6fedd8 |
---|---|
67 - Tool definition now embeds citation information. | 67 - Tool definition now embeds citation information. |
68 v0.0.13 - Use ``format_source=...`` tag. | 68 v0.0.13 - Use ``format_source=...`` tag. |
69 - Reorder XML elements (internal change only). | 69 - Reorder XML elements (internal change only). |
70 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). | 70 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). |
71 - Fixed input file help text. | 71 - Fixed input file help text. |
72 v0.0.14 - Updated to point at Biopython 1.67 (latest version in Tool Shed). | 72 v0.0.14 - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda. |
73 - Explicit dependency on ``galaxy_sequence_utils``. | 73 - Explicit dependency on ``galaxy_sequence_utils``. |
74 v0.0.15 - Use ``<command detect_errors="aggressive">`` (internal change only). | |
75 - Single quote command line arguments (internal change only) | |
74 ======= ====================================================================== | 76 ======= ====================================================================== |
75 | 77 |
76 | 78 |
77 Developers | 79 Developers |
78 ========== | 80 ========== |
87 | 89 |
88 For pushing a release to the test or main "Galaxy Tool Shed", use the following | 90 For pushing a release to the test or main "Galaxy Tool Shed", use the following |
89 Planemo commands (which requires you have set your Tool Shed access details in | 91 Planemo commands (which requires you have set your Tool Shed access details in |
90 ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: | 92 ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: |
91 | 93 |
92 $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/seq_primer_clip/ | 94 $ planemo shed_update -t testtoolshed --check_diff tools/seq_primer_clip/ |
93 ... | 95 ... |
94 | 96 |
95 or:: | 97 or:: |
96 | 98 |
97 $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/seq_primer_clip/ | 99 $ planemo shed_update -t toolshed --check_diff tools/seq_primer_clip/ |
98 ... | 100 ... |
99 | 101 |
100 To just build and check the tar ball, use:: | 102 To just build and check the tar ball, use:: |
101 | 103 |
102 $ planemo shed_upload --tar_only ~/repositories/pico_galaxy/tools/seq_primer_clip/ | 104 $ planemo shed_upload --tar_only tools/seq_primer_clip/ |
103 ... | 105 ... |
104 $ tar -tzf shed_upload.tar.gz | 106 $ tar -tzf shed_upload.tar.gz |
105 test-data/MID4_GLZRM4E04_rnd30.fasta | 107 test-data/MID4_GLZRM4E04_rnd30.fasta |
106 test-data/MID4_GLZRM4E04_rnd30.fastqsanger | 108 test-data/MID4_GLZRM4E04_rnd30.fastqsanger |
107 test-data/MID4_GLZRM4E04_rnd30_fclip.fasta | 109 test-data/MID4_GLZRM4E04_rnd30_fclip.fasta |