Mercurial > repos > peterjc > seq_primer_clip
diff tools/seq_primer_clip/seq_primer_clip.xml @ 5:530c8d6fedd8 draft
v0.0.15 - internal changes
author | peterjc |
---|---|
date | Wed, 10 May 2017 13:09:52 -0400 |
parents | 9b074c1db68e |
children | b9dc7c967ee6 |
line wrap: on
line diff
--- a/tools/seq_primer_clip/seq_primer_clip.xml Thu Feb 02 11:52:37 2017 -0500 +++ b/tools/seq_primer_clip/seq_primer_clip.xml Wed May 10 13:09:52 2017 -0400 @@ -1,18 +1,14 @@ -<tool id="seq_primer_clip" name="Primer clip sequences" version="0.0.14"> +<tool id="seq_primer_clip" name="Primer clip sequences" version="0.0.15"> <description>Trim off 5' or 3' primers</description> <requirements> <requirement type="package" version="1.0.1">galaxy_sequence_utils</requirement> <requirement type="package" version="1.67">biopython</requirement> - <requirement type="python-module">Bio</requirement> </requirements> - <stdio> - <!-- Anything other than zero is an error --> - <exit_code range="1:" /> - <exit_code range=":-1" /> - </stdio> - <version_command interpreter="python">seq_primer_clip.py --version</version_command> - <command interpreter="python"> -seq_primer_clip.py $input_file $input_file.ext $primer_fasta $primer_type $mm $min_len $keep_negatives $output_file + <version_command> +python $__tool_directory__/seq_primer_clip.py --version + </version_command> + <command detect_errors="aggressive"> +python $__tool_directory__/seq_primer_clip.py $input_file $input_file.ext $primer_fasta $primer_type $mm $min_len $keep_negatives $output_file </command> <inputs> <param name="input_file" type="data" format="fasta,fastq,sff" label="Sequence file to clip" help="FASTA, FASTQ, or SFF format."/>