Mercurial > repos > peterjc > seq_primer_clip
changeset 3:708ce1e5ac94 draft
Uploaded v0.0.11, corrected automated dependency definition
| author | peterjc |
|---|---|
| date | Thu, 21 Nov 2013 10:47:23 -0500 |
| parents | ee5acea162a7 |
| children | 9b074c1db68e |
| files | tools/seq_primer_clip/README.rst tools/seq_primer_clip/repository_dependencies.xml tools/seq_primer_clip/tool_dependencies.xml |
| diffstat | 3 files changed, 9 insertions(+), 8 deletions(-) [+] |
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--- a/tools/seq_primer_clip/README.rst Thu Oct 24 09:37:25 2013 -0400 +++ b/tools/seq_primer_clip/README.rst Thu Nov 21 10:47:23 2013 -0500 @@ -61,6 +61,7 @@ - Automated installation of Biopython dependency. - Development moved to GitHub, https://github.com/peterjc/pico_galaxy - Renamed folder and adopted README.rst naming. +v0.0.11 - Correct automated dependency definition. ======= ====================================================================== @@ -77,7 +78,7 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder:: - $ tar -czf seq_primer_clip.tar.gz tools/seq_primer_clip/README.rst tools/seq_primer_clip/seq_primer_clip.* tools/seq_primer_clip/repository_dependencies.xml test-data/dop_primers.fasta test-data/MID4_GLZRM4E04_rnd30* + $ tar -czf seq_primer_clip.tar.gz tools/seq_primer_clip/README.rst tools/seq_primer_clip/seq_primer_clip.* tools/seq_primer_clip/tool_dependencies.xml test-data/dop_primers.fasta test-data/MID4_GLZRM4E04_rnd30* Check this worked:: @@ -85,7 +86,7 @@ tools/seq_primer_clip/README.rst tools/seq_primer_clip/seq_primer_clip.xml tools/seq_primer_clip/seq_primer_clip.py - tools/seq_primer_clip/repository_dependencies.xml + tools/seq_primer_clip/tool_dependencies.xml test-data/dop_primers.fasta test-data/MID4_GLZRM4E04_rnd30.fasta test-data/MID4_GLZRM4E04_rnd30.fastqsanger
--- a/tools/seq_primer_clip/repository_dependencies.xml Thu Oct 24 09:37:25 2013 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<repositories description="This requires Biopython as a dependency."> -<!-- Leave out the tool shed and revision to get the current - tool shed and latest revision at the time of upload --> -<repository changeset_revision="3e82cbc44886" name="package_biopython_1_62" owner="biopython" toolshed="http://toolshed.g2.bx.psu.edu" /> -</repositories>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/seq_primer_clip/tool_dependencies.xml Thu Nov 21 10:47:23 2013 -0500 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="biopython" version="1.62"> + <repository changeset_revision="3e82cbc44886" name="package_biopython_1_62" owner="biopython" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>