Mercurial > repos > peterjc > seq_rename

annotate test-data/four_human_proteins.fasta @ 2:7c0642fc57ad draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.0.4, automatic dependency on Biopython 1.62, new README file, citation information, MIT licence. Includes additional tested added in v0.0.3
author peterjc
date Fri, 11 Oct 2013 04:39:16 -0400
parents 9c8c5079c8af
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
1 >sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
2 MHPAVFLSLPDLRCSLLLLVTWVFTPVTTEITSLDTENIDEILNNADVALVNFYADWCRF
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
3 SQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMK
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
4 REYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFER
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
5 VANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDK
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
6 CVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHAD
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
7 CDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREF
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
8 HHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
9 >sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
10 MKKFSRMPKSEGGSGGGAAGGGAGGAGAGAGCGSGGSSVGVRVFAVGRHQVTLEESLAEG
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
11 GFSTVFLVRTHGGIRCALKRMYVNNMPDLNVCKREITIMKELSGHKNIVGYLDCAVNSIS
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
12 DNVWEVLILMEYCRAGQVVNQMNKKLQTGFTEPEVLQIFCDTCEAVARLHQCKTPIIHRD
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
13 LKVENILLNDGGNYVLCDFGSATNKFLNPQKDGVNVVEEEIKKYTTLSYRAPEMINLYGG
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
14 KPITTKADIWALGCLLYKLCFFTLPFGESQVAICDGNFTIPDNSRYSRNIHCLIRFMLEP
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
15 DPEHRPDIFQVSYFAFKFAKKDCPVSNINNSSIPSALPEPMTASEAAARKSQIKARITDT
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
16 IGPTETSIAPRQRPKANSATTATPSVLTIQSSATPVKVLAPGEFGNHRPKGALRPGNGPE
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
17 ILLGQGPPQQPPQQHRVLQQLQQGDWRLQQLHLQHRHPHQQQQQQQQQQQQQQQQQQQQQ
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
18 QQQQQQHHHHHHHHLLQDAYMQQYQHATQQQQMLQQQFLMHSVYQPQPSASQYPTMMPQY
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
19 QQAFFQQQMLAQHQPSQQQASPEYLTSPQEFSPALVSYTSSLPAQVGTIMDSSYSANRSV
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
20 ADKEAIANFTNQKNISNPPDMSGWNPFGEDNFSKLTEEELLDREFDLLRSNRLEERASSD
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
21 KNVDSLSAPHNHPPEDPFGSVPFISHSGSPEKKAEHSSINQENGTANPIKNGKTSPASKD
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
22 QRTGKKTSVQGQVQKGNDESESDFESDPPSPKSSEEEEQDDEEVLQGEQGDFNDDDTEPE
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
23 NLGHRPLLMDSEDEEEEEKHSSDSDYEQAKAKYSDMSSVYRDRSGSGPTQDLNTILLTSA
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
24 QLSSDVAVETPKQEFDVFGAVPFFAVRAQQPQQEKNEKNLPQHRFPAAGLEQEEFDVFTK
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
25 APFSKKVNVQECHAVGPEAHTIPGYPKSVDVFGSTPFQPFLTSTSKSESNEDLFGLVPFD
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
26 EITGSQQQKVKQRSLQKLSSRQRRTKQDMSKSNGKRHHGTPTSTKKTLKPTYRTPERARR
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
27 HKKVGRRDSQSSNEFLTISDSKENISVALTDGKDRGNVLQPEESLLDPFGAKPFHSPDLS
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
28 WHPPHQGLSDIRADHNTVLPGRPRQNSLHGSFHSADVLKMDDFGAVPFTELVVQSITPHQ
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
29 SQQSQPVELDPFGAAPFPSKQ
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
30 >sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
31 MATGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHELENCSVIEGHL
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
32 QILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYAL
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
33 VIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNE
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
34 ECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECL
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
35 GNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
36 CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
37 TVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETL
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
38 EIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQE
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
39 RNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQ
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
40 NVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFS
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
41 DERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWE
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
42 RQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQIL
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
43 KELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAF
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
44 PNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYV
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
45 SARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCV
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
46 SRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIAKIIIG
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
47 PLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPEYLSASDVFPCSVYVPDEWEVSR
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
48 EKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKG
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
49 FTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMA
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
50 AEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
51 RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDN
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
52 CPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENKAPESEELEME
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
53 FEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYEEHIPYTHMNGGKKNGRILTLPRSN
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
54 PS
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
55 >sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
56 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
57 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
58 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
59 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
60 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI
9c8c5079c8af Uploaded v0.0.2, adds unit tests.
peterjc
parents:
diff changeset
61 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA