comparison tools/seq_select_by_id/seq_select_by_id.py @ 9:3b0a14722175 draft default tip

v0.0.14 - Script works on Python 2 and 3 (fixed output file mode)

8:8e1a90917fa7

from __future__ import print_function

import sys

if "-v" in sys.argv or "--version" in sys.argv:
    print("v0.0.13")
    sys.exit(0)

# Parse Command Line
try:
    tabular_file, col_arg, in_file, seq_format, out_file = sys.argv[1:]

            raise
    out_handle.close()
else:
    # Avoid overhead of parsing into SeqRecord objects,
    # just re-use the original formatting from the input file.
    out_handle = open(out_file, "w")
    count = 0
    for name in parse_ids(tabular_file, column):
        try:
            out_handle.write(records.get_raw(name))
        except KeyError:

9:3b0a14722175

from __future__ import print_function

import sys

if "-v" in sys.argv or "--version" in sys.argv:
    print("v0.0.14")
    sys.exit(0)

# Parse Command Line
try:
    tabular_file, col_arg, in_file, seq_format, out_file = sys.argv[1:]

            raise
    out_handle.close()
else:
    # Avoid overhead of parsing into SeqRecord objects,
    # just re-use the original formatting from the input file.
    out_handle = open(out_file, "wb")
    count = 0
    for name in parse_ids(tabular_file, column):
        try:
            out_handle.write(records.get_raw(name))
        except KeyError: