diff tools/filters/seq_select_by_id.xml @ 3:19e26966ed3e draft

Uploaded v0.0.6, handles Biopython dependency via the ToolShed, adopted MIT license, using reStructuredTest for the README file. No functional changes.

--- a/tools/filters/seq_select_by_id.xml	Mon Apr 15 12:28:51 2013 -0400
+++ b/tools/filters/seq_select_by_id.xml	Mon Jul 29 09:13:13 2013 -0400
@@ -1,9 +1,14 @@
-<tool id="seq_select_by_id" name="Select sequences by ID" version="0.0.4">
+<tool id="seq_select_by_id" name="Select sequences by ID" version="0.0.6">
 	<description>from a tabular file</description>
 	<version_command interpreter="python">seq_select_by_id.py --version</version_command>
 	<command interpreter="python">
 seq_select_by_id.py $input_tabular $column $input_file $input_file.ext $output_file
 	</command>
+        <stdio>
+                <!-- Anything other than zero is an error -->
+                <exit_code range="1:" />
+                <exit_code range=":-1" />
+        </stdio>
 	<inputs>
 		<param name="input_file" type="data" format="fasta,qual,fastq,sff" label="Sequence file to select from" help="FASTA, QUAL, FASTQ, or SFF format." />
 		<param name="input_tabular" type="data" format="tabular" label="Tabular file containing sequence identifiers"/>
@@ -54,5 +59,7 @@
 molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3.
 http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878.
 
+This tool is available to install into other Galaxy Instances via the Galaxy
+Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id
 	</help>
 </tool>