Mercurial > repos > peterjc > seq_select_by_id
diff tools/filters/seq_select_by_id.xml @ 3:19e26966ed3e draft
Uploaded v0.0.6, handles Biopython dependency via the ToolShed, adopted MIT license, using reStructuredTest for the README file.
No functional changes.
author | peterjc |
---|---|
date | Mon, 29 Jul 2013 09:13:13 -0400 |
parents | 28d52478ace9 |
children |
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--- a/tools/filters/seq_select_by_id.xml Mon Apr 15 12:28:51 2013 -0400 +++ b/tools/filters/seq_select_by_id.xml Mon Jul 29 09:13:13 2013 -0400 @@ -1,9 +1,14 @@ -<tool id="seq_select_by_id" name="Select sequences by ID" version="0.0.4"> +<tool id="seq_select_by_id" name="Select sequences by ID" version="0.0.6"> <description>from a tabular file</description> <version_command interpreter="python">seq_select_by_id.py --version</version_command> <command interpreter="python"> seq_select_by_id.py $input_tabular $column $input_file $input_file.ext $output_file </command> + <stdio> + <!-- Anything other than zero is an error --> + <exit_code range="1:" /> + <exit_code range=":-1" /> + </stdio> <inputs> <param name="input_file" type="data" format="fasta,qual,fastq,sff" label="Sequence file to select from" help="FASTA, QUAL, FASTQ, or SFF format." /> <param name="input_tabular" type="data" format="tabular" label="Tabular file containing sequence identifiers"/> @@ -54,5 +59,7 @@ molecular biology and bioinformatics. Bioinformatics 25(11) 1422-3. http://dx.doi.org/10.1093/bioinformatics/btp163 pmid:19304878. +This tool is available to install into other Galaxy Instances via the Galaxy +Tool Shed at http://toolshed.g2.bx.psu.edu/view/peterjc/seq_select_by_id </help> </tool>