diff tools/seq_select_by_id/README.rst @ 7:a5602454b0ad draft

v0.0.12 Depends on Biopython 1.67 via legacy Tool Shed package or bioconda; Python 3 compatible print function

--- a/tools/seq_select_by_id/README.rst	Wed May 13 10:56:29 2015 -0400
+++ b/tools/seq_select_by_id/README.rst	Thu May 11 06:26:05 2017 -0400
@@ -1,7 +1,7 @@
 Galaxy tool to select FASTA, QUAL, FASTQ or SFF sequences by ID
 ===============================================================
 
-This tool is copyright 2011-2015 by Peter Cock, The James Hutton Institute
+This tool is copyright 2011-2017 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 See the licence text below.
 
@@ -85,6 +85,10 @@
         - Reorder XML elements (internal change only).
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
         - Quote filenames in case of spaces (internal change only).
+v0.0.12 - Python style changes (internal change only).
+        - Use ``<command detect_errors="aggressive">`` (internal change only).
+        - Depends on Biopython 1.67 via legacy Tool Shed package or bioconda.
+        - Python 3 compatible print function.
 ======= ======================================================================
 
 
@@ -101,17 +105,17 @@
 Planemo commands (which requires you have set your Tool Shed access details in
 ``~/.planemo.yml`` and that you have access rights on the Tool Shed)::
 
-    $ planemo shed_upload --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/seq_select_by_id/
+    $ planemo shed_update -t testtoolshed --check_diff tools/seq_select_by_id/
     ...
 
 or::
 
-    $ planemo shed_upload --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/seq_select_by_id/
+    $ planemo shed_update -t toolshed --check_diff tools/seq_select_by_id/
     ...
 
 To just build and check the tar ball, use::
 
-    $ planemo shed_upload --tar_only  ~/repositories/pico_galaxy/tools/seq_select_by_id/
+    $ planemo shed_upload --tar_only tools/seq_select_by_id/
     ...
     $ tar -tzf shed_upload.tar.gz 
     test-data/k12_hypothetical.fasta