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comparison tools/protein_analysis/README.rst @ 21:238eae32483c draft

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"Check this is up to date with all 2020 changes (black etc)"
author peterjc
date Thu, 17 Jun 2021 08:21:06 +0000
parents a19b3ded8f33
children e1afa4b0b682
comparison
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20:a19b3ded8f33 21:238eae32483c
29 publication, in addition to citing the invididual underlying tools, please cite: 29 publication, in addition to citing the invididual underlying tools, please cite:
30 30
31 Peter Cock, Bjoern Gruening, Konrad Paszkiewicz and Leighton Pritchard (2013). 31 Peter Cock, Bjoern Gruening, Konrad Paszkiewicz and Leighton Pritchard (2013).
32 Galaxy tools and workflows for sequence analysis with applications 32 Galaxy tools and workflows for sequence analysis with applications
33 in molecular plant pathology. PeerJ 1:e167 33 in molecular plant pathology. PeerJ 1:e167
34 http://dx.doi.org/10.7717/peerj.167 34 https://doi.org/10.7717/peerj.167
35 35
36 Full reference information is included in the help text for each tool. 36 Full reference information is included in the help text for each tool.
37 37
38 38
39 Requirements 39 Requirements
190 - Record WoLF PSORT wrapper version via ``<version_command>``. 190 - Record WoLF PSORT wrapper version via ``<version_command>``.
191 - Fix error handling in SignalP wrapper. 191 - Fix error handling in SignalP wrapper.
192 - Record SignalP version via ``<version_command>``. 192 - Record SignalP version via ``<version_command>``.
193 - Internal job splitter will skip starting any pending jobs after a 193 - Internal job splitter will skip starting any pending jobs after a
194 child job fails (so the entire task will error out more quickly). 194 child job fails (so the entire task will error out more quickly).
195 v0.2.12 - Fix reporting of HMMER error in RXLR tool.
196 - Quote command line arguments when RXLR tool calls SignalP.
197 - Reduce number of temp files if SignalP is run with one thread.
195 ======= ====================================================================== 198 ======= ======================================================================
196 199
197 200
198 Developers 201 Developers
199 ========== 202 ==========