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comparison tools/protein_analysis/signalp3.xml @ 21:238eae32483c draft

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"Check this is up to date with all 2020 changes (black etc)"
author peterjc
date Thu, 17 Jun 2021 08:21:06 +0000
parents a19b3ded8f33
children e1996f0f4e85
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20:a19b3ded8f33 21:238eae32483c
166 cite the following papers: 166 cite the following papers:
167 167
168 Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013). 168 Peter J.A. Cock, Björn A. Grüning, Konrad Paszkiewicz and Leighton Pritchard (2013).
169 Galaxy tools and workflows for sequence analysis with applications 169 Galaxy tools and workflows for sequence analysis with applications
170 in molecular plant pathology. PeerJ 1:e167 170 in molecular plant pathology. PeerJ 1:e167
171 http://dx.doi.org/10.7717/peerj.167 171 https://doi.org/10.7717/peerj.167
172 172
173 Bendtsen, Nielsen, von Heijne, and Brunak (2004). 173 Bendtsen, Nielsen, von Heijne, and Brunak (2004).
174 Improved prediction of signal peptides: SignalP 3.0. 174 Improved prediction of signal peptides: SignalP 3.0.
175 J. Mol. Biol., 340:783-795. 175 J. Mol. Biol., 340:783-795.
176 http://dx.doi.org/10.1016/j.jmb.2004.05.028 176 https://doi.org/10.1016/j.jmb.2004.05.028
177 177
178 Nielsen, Engelbrecht, Brunak and von Heijne (1997). 178 Nielsen, Engelbrecht, Brunak and von Heijne (1997).
179 Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. 179 Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
180 Protein Engineering, 10:1-6. 180 Protein Engineering, 10:1-6.
181 http://dx.doi.org/10.1093/protein/10.1.1 181 https://doi.org/10.1093/protein/10.1.1
182 182
183 Nielsen and Krogh (1998). 183 Nielsen and Krogh (1998).
184 Prediction of signal peptides and signal anchors by a hidden Markov model. 184 Prediction of signal peptides and signal anchors by a hidden Markov model.
185 Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB 6), 185 Proceedings of the Sixth International Conference on Intelligent Systems for Molecular Biology (ISMB 6),
186 AAAI Press, Menlo Park, California, pp. 122-130. 186 AAAI Press, Menlo Park, California, pp. 122-130.