Mercurial > repos > peterjc > tmhmm_and_signalp
comparison tools/protein_analysis/wolf_psort.xml @ 14:6365217cd3de draft
Uploaded v0.2.3, adds unit tests for WoLF PSORT
author | peterjc |
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date | Thu, 25 Apr 2013 11:54:47 -0400 |
parents | 99b82a2b1272 |
children | 7de64c8b258d |
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13:dc958c2a963a | 14:6365217cd3de |
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1 <tool id="wolf_psort" name="WoLF PSORT" version="0.0.3"> | 1 <tool id="wolf_psort" name="WoLF PSORT" version="0.0.4"> |
2 <description>Eukaryote protein subcellular localization prediction</description> | 2 <description>Eukaryote protein subcellular localization prediction</description> |
3 <command interpreter="python"> | 3 <command interpreter="python"> |
4 wolf_psort.py $organism 8 $fasta_file $tabular_file | 4 wolf_psort.py $organism 8 $fasta_file $tabular_file |
5 ##I want the number of threads to be a Galaxy config option... | 5 ##I want the number of threads to be a Galaxy config option... |
6 </command> | 6 </command> |
21 <data name="tabular_file" format="tabular" label="WoLF PSORT $organism results" /> | 21 <data name="tabular_file" format="tabular" label="WoLF PSORT $organism results" /> |
22 </outputs> | 22 </outputs> |
23 <requirements> | 23 <requirements> |
24 <requirement type="binary">runWolfPsortSummary</requirement> | 24 <requirement type="binary">runWolfPsortSummary</requirement> |
25 </requirements> | 25 </requirements> |
26 <tests> | |
27 <test> | |
28 <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta"/> | |
29 <param name="organism" value="animal"/> | |
30 <output name="tabular_file" file="four_human_proteins.wolf_psort.tabular" ftype="tabular"/> | |
31 </test> | |
32 <test> | |
33 <param name="fasta_file" value="empty.fasta" ftype="fasta"/> | |
34 <param name="organism" value="animal"/> | |
35 <output name="tabular_file" file="empty_wolf_psort.tabular" ftype="tabular"/> | |
36 </test> | |
37 <test> | |
38 <param name="fasta_file" value="empty.fasta" ftype="fasta"/> | |
39 <param name="organism" value="plant"/> | |
40 <output name="tabular_file" file="empty_wolf_psort.tabular" ftype="tabular"/> | |
41 </test> | |
42 <test> | |
43 <param name="fasta_file" value="empty.fasta" ftype="fasta"/> | |
44 <param name="organism" value="fungi"/> | |
45 <output name="tabular_file" file="empty_wolf_psort.tabular" ftype="tabular"/> | |
46 </test> | |
47 </tests> | |
26 <help> | 48 <help> |
27 | 49 |
28 **What it does** | 50 **What it does** |
29 | 51 |
30 This calls the WoLF PSORT tool for prediction of eukaryote protein subcellular localization. | 52 This calls the WoLF PSORT tool for prediction of eukaryote protein subcellular localization. |