Mercurial > repos > peterjc > tmhmm_and_signalp
comparison tools/protein_analysis/wolf_psort.xml @ 14:6365217cd3de draft
Uploaded v0.2.3, adds unit tests for WoLF PSORT
| author | peterjc |
|---|---|
| date | Thu, 25 Apr 2013 11:54:47 -0400 |
| parents | 99b82a2b1272 |
| children | 7de64c8b258d |
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| 13:dc958c2a963a | 14:6365217cd3de |
|---|---|
| 1 <tool id="wolf_psort" name="WoLF PSORT" version="0.0.3"> | 1 <tool id="wolf_psort" name="WoLF PSORT" version="0.0.4"> |
| 2 <description>Eukaryote protein subcellular localization prediction</description> | 2 <description>Eukaryote protein subcellular localization prediction</description> |
| 3 <command interpreter="python"> | 3 <command interpreter="python"> |
| 4 wolf_psort.py $organism 8 $fasta_file $tabular_file | 4 wolf_psort.py $organism 8 $fasta_file $tabular_file |
| 5 ##I want the number of threads to be a Galaxy config option... | 5 ##I want the number of threads to be a Galaxy config option... |
| 6 </command> | 6 </command> |
| 21 <data name="tabular_file" format="tabular" label="WoLF PSORT $organism results" /> | 21 <data name="tabular_file" format="tabular" label="WoLF PSORT $organism results" /> |
| 22 </outputs> | 22 </outputs> |
| 23 <requirements> | 23 <requirements> |
| 24 <requirement type="binary">runWolfPsortSummary</requirement> | 24 <requirement type="binary">runWolfPsortSummary</requirement> |
| 25 </requirements> | 25 </requirements> |
| 26 <tests> | |
| 27 <test> | |
| 28 <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta"/> | |
| 29 <param name="organism" value="animal"/> | |
| 30 <output name="tabular_file" file="four_human_proteins.wolf_psort.tabular" ftype="tabular"/> | |
| 31 </test> | |
| 32 <test> | |
| 33 <param name="fasta_file" value="empty.fasta" ftype="fasta"/> | |
| 34 <param name="organism" value="animal"/> | |
| 35 <output name="tabular_file" file="empty_wolf_psort.tabular" ftype="tabular"/> | |
| 36 </test> | |
| 37 <test> | |
| 38 <param name="fasta_file" value="empty.fasta" ftype="fasta"/> | |
| 39 <param name="organism" value="plant"/> | |
| 40 <output name="tabular_file" file="empty_wolf_psort.tabular" ftype="tabular"/> | |
| 41 </test> | |
| 42 <test> | |
| 43 <param name="fasta_file" value="empty.fasta" ftype="fasta"/> | |
| 44 <param name="organism" value="fungi"/> | |
| 45 <output name="tabular_file" file="empty_wolf_psort.tabular" ftype="tabular"/> | |
| 46 </test> | |
| 47 </tests> | |
| 26 <help> | 48 <help> |
| 27 | 49 |
| 28 **What it does** | 50 **What it does** |
| 29 | 51 |
| 30 This calls the WoLF PSORT tool for prediction of eukaryote protein subcellular localization. | 52 This calls the WoLF PSORT tool for prediction of eukaryote protein subcellular localization. |