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comparison tools/protein_analysis/wolf_psort.xml @ 11:99b82a2b1272 draft

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Uploaded v0.2.0 which added PSORTb wrapper (written with Konrad Paszkiewicz)
author peterjc
date Wed, 03 Apr 2013 10:49:10 -0400
parents e52220a9ddad
children 6365217cd3de
comparison
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10:09ff180d1615 11:99b82a2b1272
1 <tool id="wolf_psort" name="WoLF PSORT" version="0.0.2"> 1 <tool id="wolf_psort" name="WoLF PSORT" version="0.0.3">
2 <description>Eukaryote protein subcellular localization prediction</description> 2 <description>Eukaryote protein subcellular localization prediction</description>
3 <command interpreter="python"> 3 <command interpreter="python">
4 wolf_psort.py $organism 8 $fasta_file $tabular_file 4 wolf_psort.py $organism 8 $fasta_file $tabular_file
5 ##I want the number of threads to be a Galaxy config option... 5 ##I want the number of threads to be a Galaxy config option...
6 </command> 6 </command>
29 29
30 This calls the WoLF PSORT tool for prediction of eukaryote protein subcellular localization. 30 This calls the WoLF PSORT tool for prediction of eukaryote protein subcellular localization.
31 31
32 The input is a FASTA file of protein sequences, and the output is tabular with four columns (multiple rows per protein): 32 The input is a FASTA file of protein sequences, and the output is tabular with four columns (multiple rows per protein):
33 33
34 * Sequence identifier 34 ====== ===================
35 * Compartment 35 Column Description
36 * Score 36 ------ -------------------
37 * Prediction rank 37 1 Sequence identifier
38 2 Compartment
39 3 Score
40 4 Prediction rank
41 ====== ===================
38 42
39 43
40 **Localization Compartments** 44 **Localization Compartments**
41 45
42 The table below gives the WoLF PSORT localization site definitions, and the corresponding Gene Ontology (GO) term. 46 The table below gives the WoLF PSORT localization site definitions, and the corresponding Gene Ontology (GO) term.