Mercurial > repos > peterjc > tmhmm_and_signalp

comparison tools/protein_analysis/rxlr_motifs.xml @ 7:9b45a8743100 draft

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Uploaded v0.1.0, which adds a wrapper for Promoter 2.0 (DNA tool) and enables use of Galaxy's <parallelism> tag for SignalP, TMHMM X Promoter wrappers.
author peterjc
date Mon, 30 Jul 2012 10:25:07 -0400
parents a290c6d4e658
children e52220a9ddad
comparison
equal deleted inserted replaced
6:a290c6d4e658 7:9b45a8743100
30 </tests> 30 </tests>
31 <help> 31 <help>
32 32
33 **Background** 33 **Background**
34 34
35 Many effector proteins from Oomycete plant pathogens for manipulating the host 35 Many effector proteins from oomycete plant pathogens for manipulating the host
36 have been found to contain a signal peptide followed by a conserved RXLR motif 36 have been found to contain a signal peptide followed by a conserved RXLR motif
37 (Arg, any amino acid, Leu, Arg), and then sometimes EER (Glu, Glu, Arg). There 37 (Arg, any amino acid, Leu, Arg), and then sometimes EER (Glu, Glu, Arg). There
38 are stiking parallels with the malarial host-targeting signal (Plasmodium 38 are striking parallels with the malarial host-targeting signal (Plasmodium
39 export element, or "Pexel" for short). 39 export element, or "Pexel" for short).
40 40
41 ----- 41 -----
42 42
43 **What it does** 43 **What it does**