Mercurial > repos > peterjc > tmhmm_and_signalp
comparison tools/protein_analysis/rxlr_motifs.xml @ 9:e52220a9ddad draft
Uploaded v0.1.2
Use the new <stdio> settings in the XML wrappers to catch errors.
Obeys SGE style XNSLOTS environment variable for thread count (otherwise default to 4).
author | peterjc |
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date | Fri, 25 Jan 2013 06:08:31 -0500 |
parents | 9b45a8743100 |
children | 7de64c8b258d |
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8:976a5f2833cd | 9:e52220a9ddad |
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1 <tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.5"> | 1 <tool id="rxlr_motifs" name="RXLR Motifs" version="0.0.6"> |
2 <description>Find RXLR Effectors of Plant Pathogenic Oomycetes</description> | 2 <description>Find RXLR Effectors of Plant Pathogenic Oomycetes</description> |
3 <command interpreter="python"> | 3 <command interpreter="python"> |
4 rxlr_motifs.py $fasta_file 8 $model $tabular_file | 4 rxlr_motifs.py $fasta_file 8 $model $tabular_file |
5 ##I want the number of threads to be a Galaxy config option... | 5 ##I want the number of threads to be a Galaxy config option... |
6 </command> | 6 </command> |
7 <stdio> | |
8 <!-- Anything other than zero is an error --> | |
9 <exit_code range="1:" /> | |
10 <exit_code range=":-1" /> | |
11 </stdio> | |
7 <inputs> | 12 <inputs> |
8 <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences" /> | 13 <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences" /> |
9 <param name="model" type="select" label="Which RXLR model?"> | 14 <param name="model" type="select" label="Which RXLR model?"> |
10 <option value="Bhattacharjee2006">Bhattacharjee et al. (2006) RXLR</option> | 15 <option value="Bhattacharjee2006">Bhattacharjee et al. (2006) RXLR</option> |
11 <option value="Win2007">Win et al. (2007) RXLR</option> | 16 <option value="Win2007">Win et al. (2007) RXLR</option> |