Mercurial > repos > peterjc > tmhmm_and_signalp

diff tools/protein_analysis/wolf_psort.py @ 6:a290c6d4e658

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Migrated tool version 0.0.9 from old tool shed archive to new tool shed repository
author peterjc
date Tue, 07 Jun 2011 18:07:09 -0400
parents 0f1c61998b22
children e52220a9ddad
line wrap: on
line diff
--- a/tools/protein_analysis/wolf_psort.py	Tue Jun 07 18:06:27 2011 -0400
+++ b/tools/protein_analysis/wolf_psort.py	Tue Jun 07 18:07:09 2011 -0400
@@ -41,7 +41,8 @@
 exe = "runWolfPsortSummary"
 
 """
-Note: I had trouble getting runWolfPsortSummary on the path, so used a wrapper
+Note: I had trouble getting runWolfPsortSummary on the path (via a link, other
+than by including all of /opt/WoLFPSORT_package_v0.2/bin , so used a wrapper
 python script called runWolfPsortSummary as follows:
 
 #!/usr/bin/env python
@@ -69,7 +70,7 @@
 except:
    num_threads = 0
 if num_threads < 1:
-   stop_err("Threads argument %s is not a positive integer" % sys.argv[3])
+   stop_err("Threads argument %s is not a positive integer" % sys.argv[2])
 
 fasta_file = sys.argv[3]