Mercurial > repos > peterjc > tmhmm_and_signalp

diff tools/protein_analysis/promoter2.xml @ 9:e52220a9ddad draft

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Uploaded v0.1.2 Use the new <stdio> settings in the XML wrappers to catch errors. Obeys SGE style XNSLOTS environment variable for thread count (otherwise default to 4).
author peterjc
date Fri, 25 Jan 2013 06:08:31 -0500
parents 976a5f2833cd
children 6abd809cefdd
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--- a/tools/protein_analysis/promoter2.xml	Mon Jul 30 12:56:54 2012 -0400
+++ b/tools/protein_analysis/promoter2.xml	Fri Jan 25 06:08:31 2013 -0500
@@ -1,4 +1,4 @@
-<tool id="promoter2" name="Promoter 2.0" version="0.0.2">
+<tool id="promoter2" name="Promoter 2.0" version="0.0.3">
     <description>Find eukaryotic PolII promoters in DNA sequences</description>
     <!-- If job splitting is enabled, break up the query file into parts -->
     <!-- Using 2000 per chunk so 4 threads each doing 500 is ideal -->
@@ -9,6 +9,11 @@
         ##which (on SGE at least) will set the $NSLOTS environment variable.
         ##If the environment variable isn't set, get "", and defaults to one.
     </command>
+    <stdio>
+        <!-- Anything other than zero is an error -->
+        <exit_code range="1:" />
+        <exit_code range=":-1" />
+    </stdio>
     <inputs>
         <param name="fasta_file" type="data" format="fasta" label="FASTA file of DNA sequences"/> 
     </inputs>