diff tools/protein_analysis/wolf_psort.xml @ 18:eb6ac44d4b8e draft

Suite v0.2.8, record Promoter 2 verion + misc internal updates

--- a/tools/protein_analysis/wolf_psort.xml	Fri Nov 21 08:19:09 2014 -0500
+++ b/tools/protein_analysis/wolf_psort.xml	Tue Sep 01 09:56:36 2015 -0400
@@ -1,15 +1,19 @@
-<tool id="wolf_psort" name="WoLF PSORT" version="0.0.8">
+<tool id="wolf_psort" name="WoLF PSORT" version="0.0.9">
     <description>Eukaryote protein subcellular localization prediction</description>
+    <requirements>
+        <requirement type="binary">runWolfPsortSummary</requirement>
+        <requirement type="binary">psort</requirement>
+    </requirements>
+    <stdio>
+        <!-- Anything other than zero is an error -->
+        <exit_code range="1:" />
+        <exit_code range=":-1" />
+    </stdio>
     <command interpreter="python">
       wolf_psort.py $organism "\$GALAXY_SLOTS" "$fasta_file" "$tabular_file"
       ##If the environment variable isn't set, get "", and python wrapper
       ##defaults to four threads.
     </command>
-    <stdio>
-        <!-- Anything other than zero is an error -->
-        <exit_code range="1:" />
-        <exit_code range=":-1" />
-    </stdio>
     <inputs>
         <param name="fasta_file" type="data" format="fasta" label="FASTA file of protein sequences"/> 
         <param name="organism" type="select" display="radio" label="Organism">
@@ -21,9 +25,6 @@
     <outputs>
         <data name="tabular_file" format="tabular" label="WoLF PSORT $organism results" />
     </outputs>
-    <requirements>
-        <requirement type="binary">runWolfPsortSummary</requirement>
-    </requirements>
     <tests>
         <test>
             <param name="fasta_file" value="four_human_proteins.fasta" ftype="fasta"/>