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annotate test-data/rhodopsin_proteins.fasta @ 11:679b6323db03 draft

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v0.1.0 now using matplotlib_venn instead of limma R package via rpy. Contribution from Frederic Sapet.
author peterjc
date Wed, 29 May 2019 04:45:19 -0400
parents 6aae6bc0802d
children
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6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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1 >gi|57163783|ref|NP_001009242.1| rhodopsin [Felis catus]
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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2 MNGTEGPNFYVPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRT
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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3 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC
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4 KPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVV
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5 HFTIPMIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQG
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6 SNFGPIFMTLPAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTGSKTETSQVAPA
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6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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8 >gi|3024260|sp|P56514.1|OPSD_BUFBU RecName: Full=Rhodopsin
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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9 MNGTEGPNFYIPMSNKTGVVRSPFEYPQYYLAEPWQYSILCAYMFLLILLGFPINFMTLYVTIQHKKLRT
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10 PLNYILLNLAFANHFMVLCGFTVTMYSSMNGYFILGATGCYVEGFFATLGGEIALWSLVVLAIERYVVVC
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11 KPMSNFRFSENHAVMGVAFTWIMALSCAVPPLLGWSRYIPEGMQCSCGVDYYTLKPEVNNESFVIYMFVV
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12 HFTIPLIIIFFCYGRLVCTVKEAAAQQQESATTQKAEKEVTRMVIIMVVFFLICWVPYASVAFFIFSNQG
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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13 SEFGPIFMTVPAFFAKSSSIYNPVIYIMLNKQFRNCMITTLCCGKNPFGEDDASSAATSKTEASSVSSSQ
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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14 VSPA
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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16 >gi|283855846|gb|ADB45242.1| rhodopsin [Cynopterus brachyotis]
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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17 VPFSNKTGVVRSPFEHPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLA
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18 VADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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19 NHAIMGLALTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIF
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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20 FCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSNFGPIFMTL
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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21 PAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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23 >gi|283855823|gb|ADB45229.1| rhodopsin [Myotis pilosus]
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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24 VPFSNKTGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLA
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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25 VANLFMVFGGFTTTLYTSMHGYFVFGATGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGE
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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26 NHAIMGLAFTWVMALACAAPPLAGWSRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIF
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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27 FCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASVAFYIFTHQGSNFGPVFMTI
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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28 PAFFAKSSSIYNPVIYIMMNKQFRNCMLTTLCCGKNPLGDDEASTTAS
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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30 >gi|223523|prf||0811197A rhodopsin [Bos taurus]
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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31 MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRT
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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32 PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC
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33 KPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYTPHEETNNESFVIYMFVVH
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34 FIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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35 DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA
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6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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37 >gi|12583665|dbj|BAB21486.1| fresh water form rod opsin [Conger myriaster]
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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38 MNGTEGPNFYIPMSNATGVVRSPFEYPQYYLAEPWAFSALSAYMFFLIIAGFPINFLTLYVTIEHKKLRT
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39 PLNYILLNLAVADLFMVFGGFTTTMYTSMHGYFVFGPTGCNIEGFFATLGGEIALWCLVVLAIERWMVVC
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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40 KPVTNFRFGESHAIMGVMVTWTMALACALPPLFGWSRYIPEGLQCSCGIDYYTRAPGINNESFVIYMFTC
6aae6bc0802d Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub
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41 HFSIPLAVISFCYGRLVCTVKEAAAQQQESETTQRAEREVTRMVVIMVISFLVCWVPYASVAWYIFTHQG
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42 STFGPIFMTIPSFFAKSSALYNPMIYICMNKQFRHCMITTLCCGKNPFEEEDGASATSSKTEASSVSSSS
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43 VSPA