comparison tools/plotting/venn_list.py @ 3:6aae6bc0802d draft

Uploaded v0.0.6, basic unit test, MIT licence, RST README, citation information, development moved to GitHub

2:c96bef0643dc

This script is copyright 2010 by Peter Cock, The James Hutton Institute
(formerly SCRI), UK. All rights reserved.
See accompanying text file for licence details (MIT/BSD style).

This is version 0.0.3 of the script.
"""


import sys
import rpy

print "Doing %i-way Venn Diagram" % n

def load_ids(filename, filetype):
    if filetype=="tabular":
        for line in open(filename):
            if not line.startswith("#"):
                yield line.rstrip("\n").split("\t",1)[0]
    elif filetype=="fasta":
        for line in open(filename):
            if line.startswith(">"):
                yield line[1:].rstrip("\n").split(None,1)[0]
    elif filetype.startswith("fastq"):

3:6aae6bc0802d

This script is copyright 2010 by Peter Cock, The James Hutton Institute
(formerly SCRI), UK. All rights reserved.
See accompanying text file for licence details (MIT/BSD style).

This is version 0.0.4 of the script.
"""


import sys
import rpy

print "Doing %i-way Venn Diagram" % n

def load_ids(filename, filetype):
    if filetype=="tabular":
        for line in open(filename):
            line = line.rstrip("\n")
            if line and not line.startswith("#"):
                yield line.split("\t",1)[0]
    elif filetype=="fasta":
        for line in open(filename):
            if line.startswith(">"):
                yield line[1:].rstrip("\n").split(None,1)[0]
    elif filetype.startswith("fastq"):