Mercurial > repos > peterjc > venn_list
comparison tools/venn_list/venn_list.xml @ 8:ee50d9ef9d69 draft
v0.0.11 Python 3 compatible print; capture script version
| author | peterjc |
|---|---|
| date | Thu, 11 May 2017 06:21:20 -0400 |
| parents | ba31415fedc5 |
| children | 5c5a9ce6c46d |
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| 7:ba31415fedc5 | 8:ee50d9ef9d69 |
|---|---|
| 1 <tool id="venn_list" name="Venn Diagram" version="0.0.10"> | 1 <tool id="venn_list" name="Venn Diagram" version="0.0.11"> |
| 2 <description>from lists</description> | 2 <description>from lists</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="1.0.1">galaxy_sequence_utils</requirement> | 4 <requirement type="package" version="1.0.1">galaxy_sequence_utils</requirement> |
| 5 <requirement type="python-module">rpy</requirement> | |
| 6 <requirement type="python-module">Bio</requirement> | |
| 7 <requirement type="package" version="1.0.3">rpy</requirement> | 5 <requirement type="package" version="1.0.3">rpy</requirement> |
| 8 <requirement type="package" version="3.25.3">limma</requirement> | 6 <requirement type="package" version="3.25.3">limma</requirement> |
| 9 <requirement type="package" version="1.67">biopython</requirement> | 7 <requirement type="package" version="1.67">biopython</requirement> |
| 10 </requirements> | 8 </requirements> |
| 11 <stdio> | 9 <version_command> |
| 12 <!-- Anything other than zero is an error --> | 10 python $__tool_directory__/venn_list.py --version |
| 13 <exit_code range="1:" /> | 11 </version_comman> |
| 14 <exit_code range=":-1" /> | 12 <command detect_errors="aggressive"> |
| 15 </stdio> | 13 python $__tool_directory__/venn_list.py |
| 16 <command interpreter="python"> | |
| 17 venn_list.py | |
| 18 #if $universe.type_select=="implicit": | 14 #if $universe.type_select=="implicit": |
| 19 - - | 15 - - |
| 20 #else: | 16 #else: |
| 21 "$main" $main.ext | 17 '$main' $main.ext |
| 22 #end if | 18 #end if |
| 23 "$main_lab" | 19 '$main_lab' |
| 24 #for $s in $sets: | 20 #for $s in $sets: |
| 25 "$s.set" $s.set.ext "$s.lab" | 21 '$s.set' $s.set.ext '$s.lab' |
| 26 #end for | 22 #end for |
| 27 $PDF | 23 $PDF |
| 28 </command> | 24 </command> |
| 29 <inputs> | 25 <inputs> |
| 30 <param name="main_lab" size="30" type="text" value="Venn Diagram" label="Plot title"/> | 26 <param name="main_lab" size="30" type="text" value="Venn Diagram" label="Plot title"/> |