Mercurial > repos > peterjc > venn_list
comparison tools/venn_list/README.rst @ 12:e13206029a72 draft default tip
v0.1.1, removed legacy tool_dependencies.xml - use conda for dependencies
| author | peterjc |
|---|---|
| date | Wed, 29 May 2019 06:03:59 -0400 |
| parents | 679b6323db03 |
| children |
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| 11:679b6323db03 | 12:e13206029a72 |
|---|---|
| 52 ======= | 52 ======= |
| 53 | 53 |
| 54 ======= ====================================================================== | 54 ======= ====================================================================== |
| 55 Version Changes | 55 Version Changes |
| 56 ------- ---------------------------------------------------------------------- | 56 ------- ---------------------------------------------------------------------- |
| 57 v0.0.3 - Initial public release. | 57 v0.1.1 - Removed legacy ``tool_dependencies.xml`` file (the legacy Galaxy |
| 58 v0.0.4 - Ignore blank lines when loading IDs from tabular files | 58 packages did not cover matplotlib_venn anyway). |
| 59 v0.0.5 - Explicit Galaxy error handling of return codes | 59 v0.1.0 - Now uses Python library matplotlib_venn to draw the diagram |
| 60 instead of R's limma via rpy). Contribution from Frederic Sapet. | |
| 61 v0.0.12 - Internal Python style change. | |
| 62 - Python 3 compatible exception handling. | |
| 63 v0.0.11 - Use ``<command detect_errors="aggressive">`` (internal change only). | |
| 64 - Single quote command line arguments (internal change only) | |
| 65 - Python 3 compatible print function. | |
| 66 - Capture python script version when run from Galaxy. | |
| 67 v0.0.10 - Updated to point at Biopython 1.67 (latest version in Tool Shed). | |
| 68 - Explicit dependency on ``galaxy_sequence_utils``. | |
| 69 - Python style updates (internal change only). | |
| 70 v0.0.9 - Test with three-way Venn diagram. | |
| 71 - Includes testing of failure mode. | |
| 72 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). | |
| 73 v0.0.8 - Reorder XML elements (internal change only). | |
| 74 - Fixed and improved error handling when rpy is not available. | |
| 75 - Test output relaxed to cope with more variation in PDF output. | |
| 76 - Declare Biopython dependency via the Tool Shed. | |
| 77 v0.0.7 - Renamed folder and README file. | |
| 78 - Tool definition now embeds citation information. | |
| 60 v0.0.6 - Added unit tests. | 79 v0.0.6 - Added unit tests. |
| 61 - Use reStructuredText for this README file. | 80 - Use reStructuredText for this README file. |
| 62 - Adopt standard MIT licence. | 81 - Adopt standard MIT licence. |
| 63 - Updated citation information (Cock et al. 2013). | 82 - Updated citation information (Cock et al. 2013). |
| 64 - Development moved to GitHub, https://github.com/peterjc/pico_galaxy | 83 - Development moved to GitHub, https://github.com/peterjc/pico_galaxy |
| 65 v0.0.7 - Renamed folder and README file. | 84 v0.0.5 - Explicit Galaxy error handling of return codes |
| 66 - Tool definition now embeds citation information. | 85 v0.0.4 - Ignore blank lines when loading IDs from tabular files |
| 67 v0.0.8 - Reorder XML elements (internal change only). | 86 v0.0.3 - Initial public release. |
| 68 - Fixed and improved error handling when rpy is not available. | |
| 69 - Test output relaxed to cope with more variation in PDF output. | |
| 70 - Declare Biopython dependency via the Tool Shed. | |
| 71 v0.0.9 - Test with three-way Venn diagram. | |
| 72 - Includes testing of failure mode. | |
| 73 - Planemo for Tool Shed upload (``.shed.yml``, internal change only). | |
| 74 - Tool Shed dependency for rpy and limma (thanks to Björn Grüning). | |
| 75 v0.0.10 - Updated to point at Biopython 1.67 (latest version in Tool Shed). | |
| 76 - Explicit dependency on ``galaxy_sequence_utils``. | |
| 77 - Python style updates (internal change only). | |
| 78 v0.0.11 - Use ``<command detect_errors="aggressive">`` (internal change only). | |
| 79 - Single quote command line arguments (internal change only) | |
| 80 - Python 3 compatible print function. | |
| 81 - Capture python script version when run from Galaxy. | |
| 82 v0.0.12 - Internal Python style change. | |
| 83 - Python 3 compatible exception handling. | |
| 84 v0.1.0 - Now uses Python library matplotlib_venn to draw the diagram | |
| 85 instead of R's limma via rpy). Contribution from Frederic Sapet. | |
| 86 ======= ====================================================================== | 87 ======= ====================================================================== |
| 87 | 88 |
| 88 | 89 |
| 89 Developers | 90 Developers |
| 90 ========== | 91 ========== |